Lecture 11: Covalent Bonds
Introduction to chemistry, with emphasis on basic principles of atomic and molecular electronic structure, thermodynamics, acid-base and redox equilibria, chemical kinetics, and catalysis. Introduction to the chemistry of biological, inorganic, and organic molecules.
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Lecture 19: Molecular Description of Acids and Bases
5.112 is an introductory chemistry course for students with an unusually strong background in chemistry. Knowledge of calculus equivalent to 18.01 is recommended. Emphasis is on basic principles of atomic and molecular electronic structure, thermodynamics, acid-base and redox equilibria, chemical kinetics, and catalysis. The course also covers applications of basic principles to problems in metal coordination chemistry, organic chemistry, and biological chemistry.
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Molecular reaction dynamics
This package, written in 1998, includes interactive questions and demonstrations on the dynamics of chemical reactions. The aim is to show the effect of the potential energy surface, on reaction rates. It is intended for third or fourth year undergraduates in Chemistry. To download, click on View Download and follow the instructions. To uninstall, use the standard Windows option of “Add or Remove Programs”.
Author(s): Reid Katharine Professoor;Wheatley Richard Dr

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12.746 Marine Organic Geochemistry (MIT)
This class is designed to provide the student with a global to molecular-level perspective of organic matter cycling in the oceans and marine sediments. Topics include: Organic matter (C,N,P) composition, reactivity and budgets within, and fluxes through, major ocean reservoirs; microbial recycling pathways for organic matter; models of organic matter degradation and preservation; role of anoxia in organic matter burial; relationships between dissolved and particulate (sinking and suspended) org
Author(s): Repeta, Daniel,Eglinton, Timothy

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Angiogenesis and Metastasis in Cancer
The resource below is a series of Powerpoint slides (and a list of further reading) on the cellular and molecular basis of angiogenesis and metastasis in cancer. It gives a short overview of the basic organisation of blood vessels and how tuours agrow and spread by stimulating new blood vessel growth and metastic transformation, highlighting the signalling pathways involved in these processes. These slides were created by Dr. Momna Hejmadi as part of her course to first and second year undergrad
Author(s): Dr. Momna Hejmadi, University of Bath

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7.342 Cancer Biology: From Basic Research to the Clinic (MIT)
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. In 1971, President Nixon declared the "War on Cancer," but after three decades the war is still raging. How much progress have we made toward winning the war and what are we doing to improve the fight? Unde
Author(s): Kim, Carla,Haigis, Kevin

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3.320 Atomistic Computer Modeling of Materials (SMA 5107) (MIT)
This course uses the theory and application of atomistic computer simulations to model, understand, and predict the properties of real materials. Specific topics include: energy models from classical potentials to first-principles approaches; density functional theory and the total-energy pseudopotential method; errors and accuracy of quantitative predictions: thermodynamic ensembles, Monte Carlo sampling and molecular dynamics simulations; free energy and phase transitions; fluctuations and tra
Author(s): Ceder, Gerbrand,Marzari, Nicola

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9.011 The Brain and Cognitive Sciences I (MIT)
Survey of principles underlying the structure and function of the nervous system, integrating molecular, cellular, and systems approaches. Topics: development of the nervous system and its connections, cell biology or neurons, neurotransmitters and synaptic transmission, sensory systems of the brain, the neuro-endocrine system, the motor system, higher cortical functions, behavioral and cellular analyses of learning and memory. First half of an intensive two-term survey of brain and behavioral s
Author(s): Miller, Earl,Brown, M. Christian,Wilson, Matt,Schi

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6.973 Organic Optoelectronics (MIT)
The course examines optical and electronic processes in organic molecules and polymers that govern the behavior of practical organic optoelectronic devices. Electronic structure of a single organic molecule is used as a guide to the electronic behavior of organic aggregate structures. Emphasis is placed on the use of organic thin films in active organic devices including organic LEDs, solar cells, photodetectors, transistors, chemical sensors, memory cells, electrochromic devices, as well as xer
Author(s): Bulovic, Vladimir

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5.32 Intermediate Chemical Experimentation (MIT)
5.32 involves more advanced experimental work than 5.310 or 5.311. The course emphasizes organic synthesis assisted by chiral catalysis, purification, and analysis of organic compounds employing such methods as IR, 1D and 2D NMR, UV spectroscopies and mass spectrometry, and thin layer and non-chiral and chiral gas chromatography. In 5.32, experiments also involve enzyme purification, characterization and assays, as well as molecular modeling in organic synthesis and in biochemical syst
Author(s): Gheorghiu, Mircea,Klibanov, Alexander

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Lecture 16 - 11/18/2010
Lecture 16
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Injection-moulded polystyrene ruler
The colours in the image are the result of birefringence and relate to the residual strain in the polystyrene. The pattern of strain is indicative of the flow of material during the injection process and it highlights the injection point (known as a 'gate') at the end of the ruler; the molecular alignment is greatest near this point. Towards the edges of the ruler and along its length, the material becomes more relaxed and as the molecular alignment falls, the retardation of light is less. If he
Author(s): J A Curran, Department of Materials Science and Me

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ChemTube3D
ChemTube3D contains interactive 3D animations and structures, with supporting information for some of the most important topics covered during an undergraduate chemistry degree including organic structure and bonding, organic reaction mechanisms, solid state inorganic materials and polymers.
Author(s): Nick Greeves

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Recombinant DNA
Recombinant DNA provides a methodical overview to gene manipulation and analysis in five chapters. These cover molecular cloning, DNA sequencing by the enzymatic method, the polymerase chain reaction, variable numbers of tandem repeats, and random amplification of polymorphic DNA.
Author(s): Royal Veterinary College

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9.18 Developmental Neurobiology (MIT)
This course considers molecular control of neural specification, formation of neuronal connections, construction of neural systems, and the contributions of experience to shaping brain structure and function. Topics include: neural induction and pattern formation, cell lineage and fate determination, neuronal migration, axon guidance, synapse formation and stabilization, activity-dependent development and critical periods, development of behavior.
Author(s): Nedivi, Elly

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22.56J Noninvasive Imaging in Biology and Medicine (MIT)
22.56J aims to give graduate students and advanced undergraduates background in the theory and application of noninvasive imaging methods to biology and medicine, with emphasis on neuroimaging. The course focuses on the modalities most frequently used in scientific research (X-ray CT, PET/SPECT, MRI, and optical imaging), and includes discussion of molecular imaging approaches used in conjunction with these scanning methods. Lectures by the professor will be supplemented by in-class discussions
Author(s): Jasanoff, Alan

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Immunology basics
This is a module framework. It can be viewed online or downloaded as a zip file. As taught Autumn semester 2009 Infections are a major cause of morbidity and mortality worldwide. The body fights infection through the functions of the immune system, whose power has been harnessed by the development of vaccination (immunisation). Suitable for study at: Undergraduate levels 1 and 2. Dr Ian Todd, School of Molecular Medical Sciences Dr Ian Todd is Associate Professor & Reader in Cellular Immunopatho
Author(s): Todd Ian Dr

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Nottingham U-Now
University of Nottingham, Molecular Medical Sciences
Author(s): University of Nottingham

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Fracture surface in a liquid crystalline polymer
Above their melting point, liquid crystalline polymers exhibit a mesophase within which, although able to flow and are not arranged in a crystal, they exhibit long range orientational order. This molecular alignment can be exploited to make high strength and stiffness fibres such as Kevlar, or even mouldable thermotropics such as Vectra. Molecular alignment can also be controlled by an external applied field; a property exploited in liquid crystal displays. This specimen has not had a magnetic f
Author(s): Prof A H Windle, Department of Materials Science a

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Fracture surface in a liquid crystalline polymer
Above their melting point, liquid crystalline polymers exhibit a mesophase within which, although able to flow and are not arranged in a crystal, they exhibit long range orientational order. This molecular alignment can be exploited to make high strength and stiffness fibres such as Kevlar, or even mouldable thermotropics such as Vectra. Molecular alignment can also be controlled by an external applied field; a property exploited in liquid crystal displays. This specimen has not had a magnetic f
Author(s): Prof A H Windle, Department of Materials Science a

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