Analysis Software:

Commerical

NeuroEXplorer (NEX) - multiple spike train analysis software

Statistica - Data analysis software

MatLab - Data analysis software (technical computing portal site - MathTools)

GraphPad PRISM - Data analysis/presentation software

SigmaPlot - Data analysis/presentation software

IGOR-Pro - Data analysis/presentation software - NeuroMatic (version 2, 2008) collection of IgorPro functions for analyzing & acquiring electrophysiological data

University-Academia - public domain

Statistics

R-Project for Statistical Computing R is a language and environment for statistical computing and graphics.

R is available as Free Software and runs on a wide variety of UNIX platforms and similar systems (including FreeBSD and Linux), Windows and MacOS.

STAR Spike Train Analysis with R - as it “says on the tin” - download most recent version zip file and reference manual from the CRAN site.

Independent Component Analysis (ICA)

EEGLAB MatLab toolbox – currently version 7.xx. A compiled version also available not requiring Matlab (University of California San Diego, USA)

FAST-ICA MatLab toolbox (Helsinki University of Technology, Finland)

ICA-LAB MatLab toolbox (Brain Research Institute Riken, Japan)

Coherence Analysis - NeuroSpec (Dr David Halliday, University of York, UK)

Partial Directed Coherence (PDC) - BioSig Project Matlab toolbox - an open source software library for biomedical signal processing

Wavelet Analysis of LFPs & ERPs

EP-den V2 - MatLab toolbox software for wavelet denoising of single-trial event-related potentials (Dr Rodrigo Quian Quiroga, University of Leicester UK)

LetsWave - Signal-processing toolbox (Borland Delphi 7) for wavelet Time-Frequency analysis of ERPs (Dr André Mouraux, University of Louvain Belgium)

WaveLab850 - MatLab toolbox software (Stanford University)

FieldTrip - MatLab toolbox for MEG and EEG analysis (Centre for Cognitive Neuroimaging @ Donders Institute for Brain, Cognition & Behaviour, NL)

Data Display / Analysis Utilities:

KlustaWin - Utility for unsupervised classification of multidimensional continuous data (Dr K Harris, Rutgers University & Dr B Heitler, St Andrews University)

RobustFit - free utility programme for robust locally-weighted scatterplot smoothing (Dr B Heitler, St Andrews University)

ClusterWin - free programme for unsupervised classification of multidimensional continuous data (Dr B Heitler, St Andrews University)

Scatter3D - free utility for displaying n-dimensional data (Dr B Heitler, St Andrews University)

DataView - utility for viewing and analysing digital data derived from analog signals using A/D acquisition systems (Dr B Heitler, St Andrews University)

MatOFF - utility developed for dealing with complexities common to behavioral neurophysiological experiments (NIMH Laboratory of Systems Neuroscience)

sigTOOL - MatLab script toolbox with GUI allows proprietary data file format import and spike train analysis (Dr Malcolm Lidierth, Kings College University of London)

CHRONUX - MatLab script toolbox developed for the analysis of neural data

Spike Sorting Utility:

MClust - Spike Sorting Utility (Dr David Redish, University of Minnesota USA)

Wave Cluster - MatLab spike detection & sorting Utility (Dr Rodrigo Quian Quiroga, University of Leicester UK)

Neuronal Modelling Software:

Senneca - Cross-correlation simulation (see J. Neurosci. Methods 2004 136, 23-32)

Neuron - empirically-based simulation of neurons and neuronal networks (Yale University)

Behavioural Electrophysiology Studies Equipment & Software:

Med Associates Inc - laboratory interfaces & software for physiological & behavioural monitoring and drug administration

Columbus Instruments - laboratory interfaces for physiological & behavioural monitoring and drug administration


See also Behavioural Studies - Equipment & Software