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Olivier Hanotte

Professor of Genetics & Conservation, Faculty of Medicine & Health Sciences

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Biography

Licences en Sciences Zoologiques, Université Libre de Bruxelles (Belgium), PhD (Zoology), Université de Mons - Hainaut (Belgium), 1991. Post - Doctoral Scientist, University of Leicester (UK) 1991-1995. Scientist 1995-2003, Senior Scientist - Project Leader (2003 -2008) ''Improving Animal Genetics Resources Characterization, Utilisation and Conservation'' International Livestock Research Institute (ILRI, Nairobi Kenya) 1995-2003. Director of the Frozen Ark Project 2009-2010. Professor of Population and Conservation Genetics, University of Nottingham January 2009 - Present. Member of the International Society of Animal Genetics. Member of the editorial board of Animal Genetics (2003-2009) and the Journal of Animal Breeding and Genetics (2003 - present).

Research Summary

The research group is focusing on the unraveling of the genetic polymorphisms controlling gene expression in eukaryotes. We use livestock species as a model and we studied both Mendelian traits and… read more

Selected Publications

Current Research

The research group is focusing on the unraveling of the genetic polymorphisms controlling gene expression in eukaryotes. We use livestock species as a model and we studied both Mendelian traits and quantitative traits loci. Our model includes livestock population selected intensively by human (productivity traits and morphological traits) as well as indigenous population under natural selection (e.g. survival traits such as disease resistances). We use genome wide molecular approaches (e.g. sequencing and SNP typing) to detect signature of selection. A major element of our work is the understanding of the genetic history of our model species and livestock genetic resources characterization is an important component of the project.

Ongoing research activities include the mapping Mendelian traits in traditional chicken breeds (PhD project), the understanding of the evolutionary history of indigenous Arabian Peninsula camel Camelus dromedarius populations (PhD project), the mapping and unravelling of the genetic history of indigenous chicken in Africa and Asia, and the study of the genetic adaptation to infectious diseases in indigenous zebu cattle Bos indicus of western Kenya and chicken population of Ethiopia (PhD project).

Past Research

Until December 2007, I was based at the International Livestock Research leading their genetic program on indigenous livestock genetic characterization and conservation as well as their livestock genetic of disease resistance project (trypanosomiasis in cattle and helminthosis in small ruminants).

Future Research

It is expected that in the coming years the focus of the project will drift from a within populations and species perspectives to an across organism one. Our involvement with project such as the 10K genome project (www.genome10k.org) will be expected to provide scientific research opportunities to understand the genetic control of phenotypic traits through comparative genomic approaches across metazoa. Studied model organisms will include vertebrate as well as invertebrate species.

In parallel, we are welcoming collaboration in the field of livestock landscape genomics. Understanding the environmental factors which have shaped the genome of indigenous livestock may become a major research focus for the project.

  • ALMATHEN, FAISAL, CHARRUAU, PAULINE, MOHANDESAN, ELMIRA, MWACHARO, JORAM M., OROZCO-TERWENGEL, PABLO, PITT, DANIEL, ABDUSSAMAD, ABDUSSAMAD M., UERPMANN, MARGARETHE, UERPMANN, HANS-PETER, DE CUPERE, BEA, MAGEE, PETER, ALNAQEEB, MAJED A., SALIM, BASHIR, RAZIQ, ABDUL, DESSIE, TADELLE, ABDELHADI, OMER M., BANABAZI, MOHAMMAD H., AL-EKNAH, MARZOOK, WALZER, CHRIS, FAYER, BERNARD, HOFREITER, MICHAEL, PETERS, JORIS, HANOTTE, OLIVIER and BURGER, PAMELA A., 2016. Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 113(24), 6707-6712
  • KANDUMA, ESTHER G., MWACHARO, JORAM M., MWAURA, STEPHEN, NJUGUNA, JOYCE N., NZUKI, INOSTERS, KINYANJUI, PETER W., GITHAKA, NAFTALY, HEYNE, HELOISE, HANOTTE, OLIVIER, SKILTON, ROBERT A. and BISHOP, RICHARD P., 2016. Multi-locus genotyping reveals absence of genetic structure in field populations of the brown ear tick (Rhipicephalus appendiculatus) in Kenya TICKS AND TICK-BORNE DISEASES. 7(1), 26-35
  • CALLABY R, HANOTTE O, CONRADIE VAN WYK I, KIARA H, TOYE P, MBOLE-KARIUKI MN, JENNINGS A, THUMBI SM, COETZER JAW, DE C BRONSVOORT BM, KNOTT SA, WOOLHOUSE MEJ and KRUUK LEB, 2015. Variation and covariation in strongyle infection in East African shorthorn zebu calves. Parasitology. 142(3), 499-511
  • PETERS, JORIS, LEBRASSEUR, OPHELIE, BEST, JULIA, MILLER, HOLLY, FOTHERGILL, TYR, DOBNEY, KEITH, THOMAS, RICHARD M., MALTBY, MARK, SYKES, NAOMI, HANOTTE, OLIVIER, O'CONNOR, TERRY, COLLINS, MATTHEW J. and LARSON, GREGER, 2015. Questioning new answers regarding Holocene chicken domestication in China PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 112(19), E2415-E2415
  • WOOLHOUSE ME, THUMBI SM, JENNINGS A, CHASE-TOPPING M, CALLABY R, KIARA H, OOSTHUIZEN MC, MBOLE-KARIUKI MN, CONRADIE I, HANDEL IG, POOLE EJ, NJIIRI E, COLLINS NE, MURRAY G, TAPIO M, AUGUET OT, WEIR W, MORRISON WI, KRUUK LE, BRONSVOORT BM, HANOTTE O, COETZER K and TOYE PG, 2015. Co-infections determine patterns of mortality in a population exposed to parasite infection. Science advances. 1(2), e1400026
  • MWAI, OKEYO, HANOTTE, OLIVIER, KWON, YOUNG-JUN and CHO, SEOAE, 2015. African Indigenous Cattle: Unique Genetic Resources in a Rapidly Changing World ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES. 28(7), 911-921
  • BENAVIDES, MAGDA VIEIRA, SONSTEGARD, TAD S., KEMP, STEPHEN, MUGAMBI, JOHN M., GIBSON, JOHN P., BAKER, ROBERT LEYDEN, HANOTTE, OLIVIER, MARSHALL, KAREN and VAN TASSELL, CURTIS, 2015. Identification of Novel Loci Associated with Gastrointestinal Parasite Resistance in a Red Maasai x Dorper Backcross Population PLOS ONE. 10(4),
  • BRUFORD, MICHAEL W., GINJA, CATARINA, HOFFMANN, IRENE, JOOST, STEPHANE, OROZCO-TERWENGELL, PABLO, ALBERTO, FLORIAN J., AMARAL, ANDREIA J., BARBATO, MARIO, BISCARINI, FILIPPO, COLLI, LICIA, COSTA, MAFALDA, CURIK, INO, DURUZ, SOLANGE, FERENCAKOVIC, MAJA, FISCHER, DANIEL, FITAK, ROBERT, GROENEVELD, LINN F., HALL, STEPHEN J. G., HANOTTE, OLIVIER, HASSAN, FAIZ-UL, HELSEN, PHILIPPE, IACOLINA, LAURA, KANTANEN, JUHA, LEEMPOEL, KEVIN, LENSTRA, JOHANNES A., AJMONE-MARSAN, PAOLO, MASEMBE, CHARLES, MEGENS, HENDRIK-JAN, MIELE, MARA, NEUDITSCHKO, MARKUS, NICOLAZZI, EZEQUIEL L., POMPANON, FRANCOIS, ROOSEN, JUTTA, SEVANE, NATALIA, SMETKO, ANAMARIJA, STAMBUK, ANAMARIA, STREETER, IAN, STUCKI, SYLVIE, SUPAKORN, CHINA, DA GAMA, LUIS TELO, TIXIER-BOICHARD, MICHELE, WEGMANN, DANIEL and ZHAN, XIANGJIANG, 2015. Prospects and challenges for the conservation of farm animal genomic resources, 2015-2025 Frontiers in Genetics. 6, Article No.: 314
  • KEMP, STEPHEN, BENAVIDES, MAGDA VIEIRA, MUGAMBI, JOHN M, GIBSON, JOHN P, BAKER, ROBERT LEYDEN, MARSHALL, KAREN, VAN TASSELL, CURTIS, HANOTTE, OLIVIER and SONSTEGARD, TAD S, 2015. Descriptive statistics of Red Maasai x Dorper backcrossed sheep selected phenotypes. Figshare.
  • BAHBAHANI H and HANOTTE O, 2015. Genetic resistance: tolerance to vector-borne diseases and the prospects and challenges of genomics. Revue scientifique et technique (International Office of Epizootics). 34(1), 185-97
  • WRAGG D, MASON AS, YU L, KUO R, LAWAL RA, DESTA TT, MWACHARO JM, CHO CY, KEMP S, BURT DW and HANOTTE O, 2015. Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken. BMC genomics. 16, 784
  • SCHMID M, SMITH J, BURT DW, AKEN BL, ANTIN PB, ARCHIBALD AL, ASHWELL C, BLACKSHEAR PJ, BOSCHIERO C, BROWN CT, BURGESS SC, CHENG HH, CHOW W, COBLE DJ, COOKSEY A, CROOIJMANS RP, DAMAS J, DAVIS RV, DE KONING DJ, DELANY ME, DERRIEN T, DESTA TT, DUNN IC, DUNN M, ELLEGREN H, EÖRY L, ERB I, FARRÉ M, FASOLD M, FLEMING D, FLICEK P, FOWLER KE, FRÉSARD L, FROMAN DP, GARCEAU V, GARDNER PP, GHEYAS AA, GRIFFIN DK, GROENEN MA, HAAF T, HANOTTE O, HART A, HÄSLER J, HEDGES SB, HERTEL J, HOWE K, HUBBARD A, HUME DA, KAISER P, KEDRA D, KEMP SJ, KLOPP C, KNIEL KE, KUO R, LAGARRIGUE S, LAMONT SJ, LARKIN DM, LAWAL RA, MARKLAND SM, MCCARTHY F, MCCORMACK HA, MCPHERSON MC, MOTEGI A, MULJO SA, MÜNSTERBERG A, NAG R, NANDA I, NEUBERGER M, NITSCHE A, NOTREDAME C, NOYES H, O'CONNOR R, O'HARE EA, OLER AJ, OMMEH SC, PAIS H, PERSIA M, PITEL F, PREEYANON L, PRIETO BARJA P, PRITCHETT EM, RHOADS DD, ROBINSON CM, ROMANOV MN, ROTHSCHILD M, ROUX PF, SCHMIDT CJ, SCHNEIDER AS, SCHWARTZ MG, SEARLE SM, SKINNER MA, SMITH CA, STADLER PF, STEEVES TE, STEINLEIN C, SUN L, TAKATA M, ULITSKY I, WANG Q, WANG Y, WARREN WC, WOOD JM, WRAGG D and ZHOU H, 2015. Third Report on Chicken Genes and Chromosomes 2015. Cytogenetic and genome research. 145(2), 78-179
  • BAHBAHANI H, CLIFFORD H, WRAGG D, MBOLE-KARIUKI MN, VAN TASSELL C, SONSTEGARD T, WOOLHOUSE M and HANOTTE O, 2015. Signatures of positive selection in East African Shorthorn Zebu: A genome-wide single nucleotide polymorphism analysis. Scientific reports. 5, 11729
  • SMETKO A, SOUDRE A, SILBERMAYR K, MÜLLER S, BREM G, HANOTTE O, BOETTCHER PJ, STELLA A, MÉSZÁROS G, WURZINGER M, CURIK I, MÜLLER M, BURGSTALLER J and SÖLKNER J, 2015. Trypanosomosis: potential driver of selection in African cattle. Frontiers in genetics. 6, 137
  • THUMBI SM, BRONSVOORT BMDC, POOLE EJ, KIARA H, TOYE PG, MBOLE-KARIUKI MN, CONRADIE I, JENNINGS A, HANDEL IG, COETZER JAW, STEYL JCA, HANOTTE O and WOOLHOUSE MEJ, 2014. Parasite co-infections and their impact on survival of indigenous cattle. PloS one. 9(2), e76324
  • VAN WYK IC, GODDARD A, DE C BRONSVOORT BM, COETZER JAW, HANDEL IG, HANOTTE O, JENNINGS A, LESOSKY M, KIARA H, THUMBI SM, TOYE P, WOOLHOUSE MW and PENZHORN BL, 2014. The impact of co-infections on the haematological profile of East African Short-horn Zebu calves. Parasitology. 141(3), 374-88
  • DECKER JE, MCKAY SD, ROLF MM, KIM J, MOLINA ALCALÁ A, SONSTEGARD TS, HANOTTE O, GÖTHERSTRÖM A, SEABURY CM, PRAHARANI L, BABAR ME, CORREIA DE ALMEIDA REGITANO L, YILDIZ MA, HEATON MP, LIU W, LEI C, REECY JM, SAIF-UR-REHMAN M, SCHNABEL RD and TAYLOR JF, 2014. Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle. PLoS genetics. 10(3), e1004254
  • MBOLE-KARIUKI MN, SONSTEGARD T, ORTH A, THUMBI SM, BRONSVOORT BMDC, KIARA H, TOYE P, CONRADIE I, JENNINGS A, COETZER K, WOOLHOUSE MEJ, HANOTTE O and TAPIO M, 2014. Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya. Heredity. 113(4), 297-305
  • KIARA H, JENNINGS A, BRONSVOORT BMDC, HANDEL IG, MWANGI ST, MBOLE-KARIUKI M, VAN WYK IC, POOLE EJ, HANOTTE O, COETZER JAW, WOOLHOUSE MEJ and TOYE PG, 2014. A longitudinal assessment of the serological response to Theileria parva and other tick-borne parasites from birth to one year in a cohort of indigenous calves in western Kenya. Parasitology. 141(10), 1289-98
  • BETTRIDGE JM, LYNCH SE, BRENA MC, MELESE K, DESSIE T, TERFA ZG, DESTA TT, RUSHTON S, HANOTTE O, KAISER P, WIGLEY P and CHRISTLEY RM, 2014. Infection-interactions in Ethiopian village chickens. Preventive veterinary medicine. 117(2), 358-66
  • SALIM B, TAHA KM, HANOTTE O and MWACHARO JM, 2014. Historical demographic profiles and genetic variation of the East African Butana and Kenana indigenous dairy zebu cattle. Animal genetics. 45(6), 782-90
  • MWACHARO, JORAM M, NOMURA, KOH, HANADA, HIROFUMI, AMANO, TAKASHI, HAN, JIANLIN L and HANOTTE, OLIVIER, 2014. Genotypes of Indigenous chicken from East Africa Dryad.
  • DECKER, JARAD EGAN, MCKAY, STEPHANIE D, ROLF, MEGAN M, KIM, JAEWOO, ALCALA, ANTONIO MOLINA, SONSTEGARD, TAD S, HANOTTE, OLIVIER, GOTHERSTROM, ANDERS, SEABURY, CHRISTOPHER M, PRAHARANI, LISA, BABAR, MASROOR ELLAHI, REGITANO, LUCIANA CORREIA DE ALMEIDA, YILDIZ, MEHMET ALI, HEATON, MICHEAL P, LIU, WAN-SHENG, LEI, CHU-ZHAO, REECY, JAMES M, SAIF-UR-REHMAN, MUHAMMAD, SCHNABEL, ROBERT D and TAYLOR, JEREMY F, 2014. Genotypes, SNP information, and sample information for 1,543 cattle from 134 breeds Dryad.
  • LIU, WAN-SHENG, ROLF, MEGAN M, KIM, JAEWOO, DECKER, JARED E, PRAHARANI, LISA, BABAR, MASROOR ELLAHI, REGITANO, LUCIANA CORREIA DE ALMEIDA, TAYLOR, JEREMY F, SAIF-UR-REHMAN, MUHAMMAD, YILDIZ, MEHMET ALI, HEATON, MICHAEL P, SEABURY, CHRISTOPHER M, LEI, CHU-ZHAO, HANOTTE, OLIVIER, MCKAY, STEPHANIE D, SCHNABEL, ROBERT D, SONSTEGARD, TAD S, REECY, JAMES M, ALCALA, ANTONIO MOLINA and GOTHERSTROM, ANDERS, 2014. Figure_S4.tif Figshare.
  • LIU, WAN-SHENG, ROLF, MEGAN M, KIM, JAEWOO, DECKER, JARED E, PRAHARANI, LISA, BABAR, MASROOR ELLAHI, REGITANO, LUCIANA CORREIA DE ALMEIDA, TAYLOR, JEREMY F, SAIF-UR-REHMAN, MUHAMMAD, YILDIZ, MEHMET ALI, HEATON, MICHAEL P, SEABURY, CHRISTOPHER M, LEI, CHU-ZHAO, HANOTTE, OLIVIER, MCKAY, STEPHANIE D, SCHNABEL, ROBERT D, SONSTEGARD, TAD S, REECY, JAMES M, ALCALA, ANTONIO MOLINA and GOTHERSTROM, ANDERS, 2014. Figure_S10.tif Figshare.
  • TOYE PG, BATTEN CA, KIARA H, HENSTOCK MR, EDWARDS L, THUMBI S, POOLE EJ, HANDEL IG, BRONSVOORT BMD, HANOTTE O, COETZER JAW, WOOLHOUSE MEJ and OURA CAL, 2013. Bluetongue and Epizootic Haemorrhagic Disease virus in local breeds of cattle in Kenya. Research in Veterinary Science. 94(3), 769-773
  • SOUDRÉ A, OUÉDRAOGO-KONÉ S, WURZINGER M, MÜLLER S, HANOTTE O, OUÉDRAOGO AG and SÖLKNER J, 2013. Trypanosomosis: a priority disease in tsetse-challenged areas of Burkina Faso. Tropical Animal Health and Production. 45(2), 497-503
  • MWACHARO, J.M., NOMURA, K., HANADA, H., HAN, J.L., AMANO, T. and HANOTTE, O., 2013. Reconstructing dispersal patterns of village chickens across East Africa: insights from autosomal markers Molecular Ecology. 22(10), 2683-2697
  • J. W. MWACHARO, G. BJØRNSTAD, J. L. HAN and O. HANOTTE, 2013. The history of African chicken: an archaeological and molecular perspective African Archaeological Review. 30, 97-114
  • A. W. T. MUIGAI and O. HANOTTE, 2013. The origin of African sheep: archaeological and genetic perspectives African Archaeological Review. 30, 39-50
  • T. T. DESTA, T. DESSIE, J. BETTRIDGE, S. E. LYNCH, K. MELESE, M. COLLINS, R. M. CHRISTLEY, P. WIGLEY, P. KAISER, Z. TERFA, J. MWACHARO and O. HANOTTE, 2013. Signature of artificial selection and ecological landscape on morphological structures of Ethiopian village chickens Animal Genetic Resources. 52, 17-29
  • TOYE P, HANDEL I, GRAY J, KIARA H, THUMBI S, JENNINGS A, VAN WYK IC, NDILA M, HANOTTE O, COETZER K, WOOLHOUSE M and BRONSVOORT M, 2013. Maternal antibody uptake, duration and influence on survival and growth rate in a cohort of indigenous calves in a smallholder farming system in western Kenya. Veterinary Immunology and Immunopathology. 155(1-2), 129-34
  • LUU L, BETTRIDGE J, CHRISTLEY RM, MELESE K, BLAKE D, DESSIE T, WIGLEY P, DESTA TT, HANOTTE O, KAISER P, TERFA ZG, COLLINS M and LYNCH SE, 2013. Prevalence and molecular characterisation of Eimeria species in Ethiopian village chickens. BMC Veterinary Research. 9(1), 208
  • THUMBI SM, BRONSVOORT MB, KIARA H, TOYE PG, POOLE J, NDILA M, CONRADIE I, JENNINGS A, HANDEL IG, COETZER J, STEYL J, HANOTTE O and WOOLHOUSE ME, 2013. Mortality in East African shorthorn zebu cattle under one year: predictors of infectious-disease mortality. BMC Veterinary Research. 9(1), 175
  • THUMBI SM, BRONSVOORT BMDC, POOLE EJ, KIARA H, TOYE P, NDILA M, CONRADIE I, JENNINGS A, HANDEL IG, COETZER JAW, HANOTTE O and WOOLHOUSE MEJ, 2013. Parasite co-infections show synergistic and antagonistic interactions on growth performance of East African zebu cattle under one year.: Volume 140 / Issue 14 / December 2013, pp 1789-1798 Parasitology. 140(14), 1789-1798
  • BRONSVOORT BMDC, THUMBI SM, POOLE EJ, KIARA H, TOSAS AUGUET O, HANDEL IG, JENNINGS A, CONRADIE I, MBOLE-KARIUKI MN, TOYE PG, HANOTTE O, COETZER J and WOOLHOUSE ME, 2013. Design and descriptive epidemiology of the Infectious Diseases of East African Livestock (IDEAL) project, a longitudinal calf cohort study in western Kenya. BMC veterinary research. 9(1), 171
  • WRAGG D, MWACHARO JM, ALCALDE JA, WANG C, HAN J, GONGORA J, GOURICHON D, TIXIER-BOICHARD M and HANOTTE O, 2013. Endogenous retrovirus EAV-HP linked to blue egg phenotype in Mapuche fowl. PloS one. 8(8), e71393
  • SIWEK M, WRAGG D, SŁAWIŃSKA A, MALEK M, HANOTTE O and MWACHARO JM, 2013. Insights into the genetic history of Green-legged Partridgelike fowl: mtDNA and genome-wide SNP analysis. Animal genetics. 44(5), 522-32
  • MURRAY GG, WOOLHOUSE ME, TAPIO M, MBOLE-KARIUKI MN, SONSTEGARD TS, THUMBI SM, JENNINGS AE, VAN WYK IC, CHASE-TOPPING M, KIARA H, TOYE P, COETZER K, DEC BRONSVOORT BM and HANOTTE O, 2013. Genetic susceptibility to infectious disease in East African Shorthorn Zebu: a genome-wide analysis of the effect of heterozygosity and exotic introgression. BMC evolutionary biology. 13(1), 246
  • FINCH, BRIAN, BJORNSTAD, GRO, SHANNI, ITAI, MUCHAI, MUCHANE, BISHOP, ANNE, HANOTTE, OLIVIER and BISHOP, RICHARD, 2013. High levels of mitochondrial cytochrome b sequence diversity are present within the Anthus similis complex in sub-Saharan Africa OSTRICH. 84(2), 145-151
  • TIXIER-BOICHARD, MICHELE, HAN, JIAN-LIN, WRAGG, DAVID, MWACHARO, JORAM M, ALCALDE, JOSE A, GONGORA, JAIME, GOURICHON, DAVID, HANOTTE, OLIVIER and WANG, CHEN, 2013. Frequency of genotypes observed by multiplex PCR. Figshare. 1,
  • TIXIER-BOICHARD, MICHELE, HAN, JIAN-LIN, WRAGG, DAVID, MWACHARO, JORAM M, ALCALDE, JOSE A, GONGORA, JAIME, GOURICHON, DAVID, HANOTTE, OLIVIER and WANG, CHEN, 2013. Summary of Ensembl Variant Effect Predictor results for oocyan-unique SNPs in captured region. Figshare. 1,
  • KUGONZA DR, KIWUWA GH, MPAIRWE D, JIANLIN H, NABASIRYE M, OKEYO AM and HANOTTE O, 2012. Accuracy Of Pastoralists' Memory-Based Kinship Assignment Of Ankole Cattle: A Microsatellite Dna Analysis. Journal of Animal Breeding and Genetics = Zeitschrift Für Tierzüchtung Und Züchtungsbiologie. 129(1), 30-40
  • SILVA MVB, SONSTEGARD TS, HANOTTE O, MUGAMBI JM, GARCIA JF, NAGDA S, GIBSON JP, IRAQI FA, MCCLINTOCK AE, KEMP SJ, BOETTCHER PJ, MALEK M, VAN TASSELL CP and BAKER RL, 2012. Identification Of Quantitative Trait Loci Affecting Resistance To Gastrointestinal Parasites In A Double Backcross Population Of Red Maasai And Dorper Sheep. Animal Genetics. 43(1), 63-71
  • ORENGE CO, MUNGA L, KIMWELE CN, KEMP S, KOROL A, GIBSON JP, HANOTTE O and SOLLER M, 2012. Trypanotolerance in N'Dama x Boran crosses under natural trypanosome challenge: effect of test-year environment, gender, and breed composition. BMC genetics. 13, 87
  • KANDUMA EG, MWACHARO JM, SUNTER JD, NZUKI I, MWAURA S, KINYANJUI PW, KIBE M, HEYNE H, HANOTTE O, SKILTON RA and BISHOP RP, 2012. Micro- and minisatellite-expressed sequence tag (EST) markers discriminate between populations of Rhipicephalus appendiculatus. Ticks and tick-borne diseases. 3(3), 128-36
  • WRAGG D, MWACHARO JM, ALCALDE JA, HOCKING PM and HANOTTE O, 2012. Analysis of genome-wide structure, diversity and fine mapping of Mendelian traits in traditional and village chickens. Heredity. 109(1), 6-18
  • GIFFORD-GONZALEZ, D. and HANOTTE, O., 2011. Domesticating Animals in Africa: Implications of Genetic and Archaeological Findings J World Prehist. 24(1), 1-23
  • MWACHARO, J.M., BJØRNSTAD, G., MOBEGI, V., NOMURA, K., HANADA, H., AMANO, T., JIANLIN, H. and HANOTTE, O., 2011. Mitochondrial DNA reveals multiple introductions of domestic chicken in East Africa Molecular Phylogenetics and Evolution. 58(2), 374-382
  • KUGONZA, D. R., JIANLIN, H., NANASIRYE, M, MPAIRWE, M, KIWUWA, G. H, OKEYO, A. M. and HANOTTE, O., 2011. Genetic diversity and differentiation of Ankole cattle populations in Uganda inferred from microsatellite data Livestock Science. 135, 140-147
  • NOYES, H., BRASS, A., OBARA, I., ANDERSON, S., ARCHIBALD, A.L., BRADLEY, D.G., FISHER, P., FREEMAN, A., GIBSON, J., GICHERU, M., HALL, L., HANOTTE, O., HULME, H., MCKEEVER, D. and MURRAY, C., 2011. Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection Proceedings of the National Academy of Sciences of the United States of America. 108(22), 9304-9309
  • DESSIE, T, TAYE, T, DANA, N, AYALEW, W and HANOTTE, O, 2011. Current State Of Knowledge On Phenotypic Characteristics Of Indigenous Chickens In The Tropics Worlds Poultry Science Journal. 67(3), 507-516
  • JOOST, S, COLLI, L, BONIN, A, BIEBACH, I, ALLENDORF, FW, HOFFMANN, I, HANOTTE, O, TABERLET, P and BRUFORD, MW, 2011. Promoting Collaboration Between Livestock And Wildlife Conservation Genetics Communities Conservation Genetics Resources. 3(4), 785-788
  • DOWNING, T., O'FARRELLY, C., BHUIYAN, A.K., SILVA, P., NAQVI, A.N., SANFO, R., SOW, R.-S., PODISI, B., HANOTTE, O. and BRADLEY, D.G., 2010. Variation in chicken populations may affect the enzymatic activity of Lysozyme Animal Genetics. 41(2), 213-217
  • OMMEH, S., JIN, L.N., EDING, H, MUCHADEYI, F.C., SULANDARI, S, ZEIN, M.S.A., DANBARO, G., WANI, C.E., ZHAO, S.G., NIE, Q.H., ZHANG, X.Q., NDILA, M., PREISINGER, R., CHEN, G.H., YOUSIF, I.A. and HEO, K., 2010. Geographic and Breed Distribution Patterns of an A/G Polymorphism Present in the Mx Gene Suggests Balanced Selection in Village Chickens International Journal of Poultry Science. 9(1), 32-38
  • KIPLAGAT, S.K., AGABA, M., KOSGEY, I.S., OKEYO, M., INDETIE, D., HANOTTE, O. and LIMO, M.K., 2010. Genetic polymorphism of kappa-casein gene in indigenous Eastern Africa goat populations International Journal of Genetics and Molecular Biology. 2(1), 1-5
  • OLE KWALLAH, A.B., OKEYO, A.M., MBURU, D., HANOTTE, O. and MUIGAI, A.W.T., 2010. Characterization of sheep populations of Kenya: Evidence of dilution in the indigenous Red Maasi breed In: 9th World Congress on Genetics Applied to Livestock Production, Leipzig, Germany. (In Press.)
  • DORJI, TASHI, JIANLIN, HAN, WAFULA, PO, YAMAMOTO, YOSHIO, SASAZAKI, SHINJI, OYAMA, KENJI, HANOTTE, OLIVER, LIN, BANG-ZHONG and MANNEN, HIDEYUKI, 2010. Sheep genetic diversity in Bhutan using microsatellite markers. Animal Science Journal. 81(2), 145-51
  • FLURY, C, TAPIO, M, SONSTEGARD, T, SIMIANER, H, HANOTTE, O, RIEDER, S, 2010. Effective population size of an indigenous Swiss cattle breed estimated from linkage desequilibrium Journal of Animal Breeding and Genetics. 127(5), 339-347
  • FLURY, C., TAPIO, M., SONSTEGARD, T., DROGEMULLER, C., LEEB, T., HANOTTE, O., SIMIANER, H. and RIEDER, S., 2010. The Use of SNP For The Estimation Of Effective Population Size In Cattle Breeds In: 9th World Congress on Genetics Applied to Livestock Production (CGALP), i Leipzig, Germany, 1-6 August 2010..
  • QI, X.B., JIANLIN, H., WANG, G., REGE, J.E.O. and HANOTTE, O., 2010. Assessment of cattle genetic introgession into domestic yak populations using mitochondrial and microsatellite DNA markers Animal Genetics. 41(3), 242-252
  • ADEBAMBO, A, MOBEGI, V, MWACHARO, J, OLADEJO B. M, ADEWALE R. A, ILORI L. O, MAKANJUOLA B. O, AFOLAYAN O and BJORNSTAD, G, HAN, J, HANOTTE, O, 2010. Lack of phylogeographic structure of Nigerian chicken revealed by mitochondrial DNA D-loop sequence analysis International Journal of Poultry Science. 9(5), 503-507
  • HANOTTE, O., DESSIE, T. and KEMP, S., 2010. Time To Tap Africa's Livestock Genomes Science. 328(5986), 1640-1641
  • OLE KWALLAH, A.B., OKEYO, A.M., MBURU, D., HANOTTE, O. and MUIGAI, A.W.T., 2010. Genetic Diversity and Relationships Of Sheep Breeds Of Kenya: Preliminary results And Evidence of Dilution of the Indigenous Red Maasai In: 9th World Congress on genetics Applied to Livestock Production (WCGALP) i Leipzig, Germany, 1-6 August 2010..
  • ORENGE, C., MUNGA, L., KIMWELE, C., KEMP, S., KOROL, A., GIBSON, J., HANOTTE, O. and SOLLER, M., 2010. Expression of trypanotolerance in N'Dama x Boran crosses under field challenge in relation to N'Dama genome content In: BMC Proceedings. 1-11
  • REVAY, T., BODZSAR, N., MOBEGI, V.E., HANOTTE, O. and HIDAS, A., 2010. Origin of Hungarian indigenous chicken breeds inferred from mitochondrial DNA D-loop sequences Animal Genetics. 41, 548-550
  • MUIGAI, A.W.T., OKEYO, A.M., KWALLAH, A.K., MBURU, D. and HANOTTE, O., 2009. Characterization of sheep populations of Kenya using microsatellite markers: Implications for conservation and management of indigenous sheep populations South African Journal of Animal Science. 39(1), 93-96
  • YUZHU, L., SHURU, C., JIANG, H., HANOTTE, O. and JIANLIN, H., 2009. Assessment of genetic relationships among the Plateau Merino Populations in China using microsatellite DNA markers Scientia Agricultura Sinica. 42(2), 669-676
  • THE BOVINE HAPMAP CONSORTIUM, 2009. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds Science. 324(5926), 528-532
  • SILVA, P., JIANLIN, H., HANOTTE, O., CHANDRASIRI A.D.N, and HERATH H.M.S.P., 2009. Indigenous cattle in Sri Lanka: Production systems and genetic diversity In: Proceedings of the FAO/IAEA International symposium on sustainable improvement of animal production and health. 31
  • GENOME 10K COMMUNITY OF SCIENTISTS (OLIVIER HANOTTE - CO AUTHOR), 2009. Genome 10K: A proposal to obtain whole-genome sequence for 10 000 vertebrate species Journal of Heredity. 100(6), 659-674
  • KIJAS, J.W., TOWNLEY, D., DALRYMPLE, B.P., HEATON, M.P., MADDOX, J.F., MCGRATH, A., WILSON, P., INGERSOLL, R.G., MCCULLOCH, R., MCWILLIAM, S., TANG, D., MCEWAN, J., COCKETT, N., ODDY, V.H. and NICHOLAS,, 2009. A genome wide survey of SNP variation reveals the genetic structure of sheep breeds PLoS ONE. 4(3),
  • SHU-RU, C., YUZHU, L., JIANLIN, L. and HANOTTE, O., 2009. Genetic diversity and origin of Gansu indigenous sheep breeds determined by mitochondrial DNA D-loop sequence Acta Veterinaria et Zootechnica-Sinica. 40(8), 1179-1185
  • DOWNING, T, LYNN, D J, CONNELL, S, LLOYD, A T, BHUIYAN, A K, SILVA, P, NAQVI, A N, SANFO, R, SOW, R S, PODISI, B, HANOTTE, O, O'FARELLY, C O, BRADLEY, D, 2009. Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus BMC Evolutionary Biology. 9, 136-149
  • DESSIE, T., GETAHUN, E., MAMO, Y., REGE, J.E.O., HANOTTE, O. and AYALEW, W., 2009. Delivering systematic information on indigenous farm animal genetic resources of developing countires: Inclusion of poultry in DAGRIS In: Australian Centre for International Agricultural Research (ACIAR) proceedings 131. 154-159
  • DOWNING,, LYNN,, CONNELL,, LLOYD,, BHUIYAN,, SILVA,, NAQVI,, SANFO,, SOW,, PODISI,, O'FARRELLY,, HANOTTE, and BRADLEY,, 2009. Contrasting evolution of diversity at two disease-associated chicken genes. Immunogenetics. 61(4), 303-314
  • RAMIREZ, O, OJEDA, A, TOMAS, A, GALLARDO, D, HUANG, L S, FOLCH, J M, CLOP, A, SANCHEZ, A, BADAOUI, B, HANOTTE, O, OMITOGUN-GALMAN, O, MAKUZA, S M, SOTO, H, CADILLO, J, KELLY, L, CHO, I C, YEGHOYAN, S,, 2009. Integrating Y-Chromosome, Mitochondrial and autosomal data to analyse the origin of pig breeds Molecular Biology and Evolution. 26(9), 2061-72
  • SHENGGUO, Z., HANOTTE, O. and JIANLIN, H., 2009. Identification and characterization of a pertect mono-nucleotide microsatellite within 16S rRNA gene in chicken mtDNA genome The Philippine Agricultural Scientist. 92(4), 353-361
  • KOUDANDE, O D, DOSSOU-GBETE, G, MUJIBI, F, KIBOGO, H, MBURU, D, MENSAH, G A, HANOTTE, O, VAN ARENDONK, J A M, 2009. Genetic diversity and zebu genes introgression in cattle population along the coastal region of the Bight of Benin Animal Genetic Resources Information (AGRI). 44, 45-56
  • MUEMA, E.K., WAKHUNGU, J.W., HANOTTE, O. and JIANLIN, H., 2009. Genetic diversity and relationship of indigenous goats of Sub-Saharan Africa using microsatellite DNA markers Livestock Research for Rural Development. 21(2), Article No.28
  • MEGENS, H-K., CROOIJMANS, R., BASTIAANSEN, J., KERSTENS, H., COSTER, A., JALVING, R., VEREIJKEN, A., SILVA, P., MUIR. W., CHENG, H., HANOTTE, O. and GROENEN, M., 2009. Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken BMC Genetics. 10(86),
  • DESSIE, T., BIRUK, A., MAMO, Y., REGE, J.E.O. and HANOTTE, O., 2009. Delivering systematic information on indigenous farm animal genetic resources of developing countries In: Proceedings of the 11th annual conference of the Ethiopian Society of Aggricultural Economists (ESAE), Alemaya, Ethiopia. 171-178
  • DECKER, J.E., CHRIS PIRES, J., CONANT, G.C., MCKAY, S.D., HEATON, M.P., CHEN, K., COPPER, A., VIKKI, J.V., SEABURY, C.M., CAETANO, A.R., JOHNSON, G.S., BRENNEMAN, R.A., HANOTTE, O., EGGERT, L.S. and WIEN, 2009. Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics PNAS. 1-6
  • ORENGE, .O., KIMWELE, C.N., KEMP, S.J., KOROL, A.B., MUNGA, L.K., MURILLA, G., HANOTTE, O. and SOLLER, M, 2009. Effect of N'Dama origin marker alleles on trypanotolerance in a backcross cattle population under natural tsetse and trypanosomosis challenge In: Proceedings of the 30th ISCTRC Conference held in Kampala, Uganda. 125
  • CHICKEN DIVERSITY CONSORTIUM (AFRICA): BJØRNSTAD, W., BULIMO, W., JIANLIN, H., KIERSTEIN, G., MAZHANI, L., PODISI, B., HIRBO, J., AGYEMANG, K., WOLLNY, C., GONDWE, T., ZEUH, V., TADELLE, D. and ABEB, 2009. Mitochondrial DNA-Loop Analysis of Southwestern Nigerian Chicken: Analisis de D-Loop ADN and mitocondrial de pollos de SW Nigeria Archivos de zootecnia. 58(224), 637-643
  • KEMP, S J, HANOTTE, O, AGABA, M, NOYES, H A, GIBSON, J, ARCHIBALD, A, RENNIE, C, HULME, H and BRASS, A, 2008. Genomics approaches to study the biology underlying resistance to trypanosomiasis--some unexpected lessons. Developments in biologicals. 132, 89-91
  • NDUMU, DEO B, BAUMUNG, ROSWITHA, HANOTTE, OLIVIER, WURZINGER, MARIA, OKEYO, MWAI A, JIANLIN, HAN, KIBOGO, HARRISON and SÖLKNER, JOHANN, 2008. Genetic and morphological characterisation of the Ankole Longhorn cattle in the African Great Lakes region. Genetics, selection, evolution : GSE. 40(5), 467-90
  • DOUAUD, MARINE, FÈVE, KATIA, GERUS, MARIE, FILLON, VALÉRIE, BARDES, SUZANNE, GOURICHON, DAVID, DAWSON, DEBORAH A, HANOTTE, OLIVIER, BURKE, TERRY, VIGNOLES, FLORENCE, MORISSON, MIREILLE and TIXI, 2008. Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping. BMC Genomics. 9, 129
  • JIANLIN, H., MWACHARO, J.M., MOBEGI, V., AMANO, T. and HANOTTE, O., 2008. Origin and geographic distribution of maternal lineages in African indigenous chickens In: 19th Biennial Meeting of the Society of Africanist Archaeologists (SAFA) held in Frankfurt, Germany, 8-11 September 2008. 53-54
  • JIN, L., ZENG, S., HANOTTE, O. and JIANLIN, H., 2008. Sequences of MCW0371 reveal complex structures having alleles of either perfect mono-nucleotide repeats or compound microsatellite repeats In: 31st International Conference on Animal Genetics, ISAG 2008 held in Wageningen, the Netherlands, 20-24 July 2008.. 24 (4020)
  • XUEBIN, Q, JIANLIN, H, BLENCH, R, REGE, J E O, HANOTTE, O, 2008. Understanding the yak pastoralism in Central Asian Highlands: genetic evidence for origin, domestication and dispersion of domestic yak. In: SANCHEZ-MAZAS, A, BLENCH, R, ROSS, M D, PEIROS, I, LIN, M, ed., Past Human Migrations in East Asia: Matching archaeology, linguistics and genetics Routledge, Taylor & Francis Group, London and Now York.
  • RAZAFINDRAIBE, HANTA, MOBEGI, VICTOR A, OMMEH, SHEILA C, RAKOTONDRAVAO, M L, BJØRNSTAD, GRO, HANOTTE, OLIVIER and JIANLIN, HAN, 2008. Mitochondrial DNA origin of indigenous malagasy chicken. Annals of the New York Academy of Sciences. 1149, 77-9
  • GONGORA, JAIME, RAWLENCE, NICOLAS J, MOBEGI, VICTOR A, JIANLIN, HAN, ALCALDE, JOSE A, MATUS, JOSE T, HANOTTE, OLIVIER, MORAN, CHRIS, AUSTIN, JEREMY J, ULM, SEAN, ANDERSON, ATHOLL J, LARSON, GREGER and CO, 2008. Indo-European and Asian origins for Chilean and Pacific chickens revealed by mtDNA. Proceedings of the National Academy of Sciences of the United States of America. 105(30), 10308-13
  • GONGORA, J, RAWLENCE, JN J, MOBEGI, V A, JIANLIN, H, ALCADE, J A, MATUS, J T, HANOTTE, O, MORAN, C, AUSTIN, J J, ULM, S, ANDERSON, A J, LARSON, G, COOPER, A, 2008. Reply to Storey et al.: More DNA and dating studies needed for ancient El Arenal-1 chickens Proceedings of the National Academy of Sciences of the United States of America. 105(48), 10308-10313
  • AGABA, M., ANDERSON, S., ARCHIBALD, A., BRASS, A., GIBSON, J., HALL, L., HANOTTE, O., HULME, H., KEMP, S. J., MWAKAYA, J., NOYES, H. A., OGUGO, M. and RENNIE, C., 2008. Genomics Approaches To Trypanosomiasis Resistance In: Poster presented at Ark Genomics Conference, Edinburgh, 7-9 April 2008.
  • BIN FAN, JIAN-LIN HAN, SHI-LIN CHEN, DAVID, N, MBURU, HANOTTE, O, OI-KANG CHEN, SHU-HONG ZHAO, KUI LI, 2008. Individual-breed assignments in caprine populations using microsatellite DNA analysis Small Ruminant Research. 75, 154-161
  • SHENGGUO, Z., HANOTTE, O. and JIANLIN, H., 2008. Identification and characterization of a perfect mono-nucleotide microsatellite within 16S rRNA gene in chicken mtDNA sequence In: 31st International Conference on Animal Genetics, ISAG 2008 held in Wageningen, the Netherlands, 20-24 July 2008..
  • GONGORA, J., RAWLENCE, N.J., MOBEGI, V.A., JIANLIN, H., ALCALDE, J.A., MATUS, J.T., HANOTTE, O., MORAN, C., AUSTIN, J.J., ULM, S., ANDERSON, A.J., LARSON, G. and COOPER, A., 2008. Indo-Europeans and Asian origin for Chilean and Pacific chickens revealed by mtDNA Proceedings of the National Academy of Sciences. 105(30), 10308-10313
  • ANDERUNG, C, HELLBORG, L, SEDDON, J, HANOTTE, O and GÖTHERSTRÖM, A, 2007. Investigation of X- and Y-specific single nucleotide polymorphisms in taurine (Bos taurus) and indicine (Bos indicus) cattle. Animal genetics. 38(6), 595-600
  • DOWNING, T., LYNN, D.J., CONNELL, S., LLOYD, A., O’FARRELLY, HANOTTE, O. and BRADLEY, D.G., 2007. A population genetic examination of two disease-associated chicken genes In: International Chicken Meeting, 11- 14 April, Barcelona, Spain..
  • MWACHARO, J M, NOMURA, K, HANADA, H, JIANLIN, H, HANOTTE, O and AMANO, T, 2007. Genetic relationships among Kenyan and other East African indigenous chickens. Animal genetics. 38(5), 485-90
  • HANOTTE, O, 2007. Origin and History of Livestock Diversity. Section A. In: RICHKOWSKY, B, PILLING, D, ed., The State of the World's Animal Genetic Resources for Food and Agriculture F.A.O. Rome. 5-19
  • HANTA, R., MOBEGI, V., OMMEH, S. C., RAKOTONDRAVAO, BJORNSTAD, G., HANOTTE, O. and JIANLIN, H., 2007. Mitochondrial DNA Origin of Indigenous Malagasy Chickens: Implication for a Functional Polymorphism of the Mx Gene In: 9th Biennial Conference of the Society for Tropical Veterinary Medicine - Animal Biodiversity and Emerging Diseases Prediction and Prevention held in Merida, Mexico, June 17-22, 2007.
  • GIZAW, S, VAN ARENDONK, J A M, KOMEN, H, WINDIG, J J and HANOTTE, O, 2007. Population structure, genetic variation and morphological diversity in indigenous sheep of Ethiopia. Animal genetics. 38(6), 621-8
  • FINLAY, E., TAPIO, M., KIERSTEIN, G., JIANLIN, H. and HANOTTE, O., 2007. Assessment of sheep domestication history based on mitochondrial DNA diversity of contemporary Old World sheep In: The 11th Congress of ‘’The European Society for Evolutionary Biology’’, 354. Tabergs Media Group, Uppsala, Sweden. http://www-conference.slu.se/eseb2007/ESEB%20abstract%20book.pd.
  • ORENGE, C.O., KOROL, A ., KIMWELE, C. N., KEMP, S., HANOTTE, O., MUNGA, L.K., GIBSON, J.P., MURILLA, G. and SOLLER, M., 2007. Detection of Quantitative Trait Loci (QTL) controlling trypanotolerance in a backcross of (N’Dama X Kenyan Boran) X Kenyan Boran cattle population under a natural tsetse and trypanosomosis field conditions in Narok District (Kenya) In: ISCTRC conference, 30 September – 6 October 2007. Luanda, Angola..
  • GIZAW, SOLOMON, KOMEN, HANS, WINDIG, JACK J, HANOTTE, OLIVIER and VAN ARENDONK, JOHAN A M, 2007. Conservation priorities for Ethiopian sheep breeds combining threat status, breed merits and contributions to genetic diversity. Genetics, selection, evolution : GSE. 40(4), 433-47
  • SILVA, L.P., NANAYAKKARA, V., JIANLIN, H., HANOTTE, O., CHANDRASIRI, A.D.N. and HERATH, H.M.S.P., 2006. Genetic characterization of indigenous cattle in Sri Lanka In: XIIth AAAP Animal Science Congress 2006 held in Busan, Korea, 18-22 September, 2006.. 308
  • FREEMAN, A R, BRADLEY, D G, NAGDA, S, GIBSON, J P and HANOTTE, O, 2006. Combination of multiple microsatellite data sets to investigate genetic diversity and admixture of domestic cattle. Animal genetics. 37(1), 1-9
  • AQUINO, G.M.B., LAUDE, R.P., JIANLIN, H. and HANOTTE, O., 2006. Mitochondrial DNA analysis of genetic introgression in selected Philippine cattle populations In: Abstracts presented at the Second Molecular Biology and Biotechnology Symposium held in University of the Philippines, Los Banos, Laguna, Philippines. 15
  • YEON, S.H., CHO, C.Y., JIN, H.J., KIM, C.D., LEE, S.S., WEE, M.S., KIM, Y.K., JIANLIN, H. and HANOTTE, O., 2006. Variation on the cytochrome b gene of mitochondrial DNA in chicken, including Korean natives In: XIIth AAAP Animal Science Congress 2006 held in Busan, Korea, 18-22 September, 2006.. 308
  • JIN, H.J., YEON, S.H., KIM, C.D., CHO, C.Y., LEE, S.S., WEE, M.S., JIANLIN, H. and HANOTTE, O., 2006. Detection of DNA polymorphisms using RAPD and SSCP in Korean chicken In: 30th International Conference on Animal Genetics, ISAG 2006 held in Porto Seguro, Brazil, 20-25 August 2006.. 34
  • MBURU, D.N., FAN, B., VAHIDI, S.M.F., FARUQUE, M.O., BINH, N.T., NANAYAKKARA, H.L.V.N., ZEIN, M.S.A., MAHMOOD, S., LI, K., THUY, L.T., SILVA, L.P., MULADNO, M., NAQVI, A.N., MIRHOSEINIE, S.Z. and ALS, 2006. Genetic diversity and population structure of indigenous goats from Asia In: XIIth AAAP Animal Science Congress 2006 held in Busan, Korea, 18-22 September, 2006.. 339
  • FREEMAN, A R, BRADLEY, D G, NAGDA, S, GIBSON, J P, HANOTTE, O, 2006. Combination of multiple microsatellite datasets to investigate genetic diversity and admixture of domestic cattle Animal Genetics. 37(1), 1-9
  • GONGORA, J., MOBEGI, V.A., JIANLIN, H., ALCALDE, J., MATUS, J., HANOTTE, O. and MORAN, C., 2006. Mitochondrial DNA sequences reveal a putative East Asian ancestry for old Chilean chickens In: 30th International Conference on Animal Genetics, ISAG 2006 held in Porto Seguro, Brazil, 20-25 August 2006..
  • ODONGO, D O, OURA, C A L, SPOONER, P R, KIARA, H, MBURU, D, HANOTTE, O H and BISHOP, R P, 2006. Linkage disequilibrium between alleles at highly polymorphic mini- and micro-satellite loci of Theileria parva isolated from cattle in three regions of Kenya. International Journal for Parasitology. 36(8), 937-46
  • JIN, H.J., YEON, S.H., SON, D.S., CHO, S.R., WEE, M.S., KIM, C.D., CHO, C.Y., KIM, Y.K., JIANLIN, H. and HANOTTE, O., 2006. Establishing method for sex determination using PCR and real time PCR in cattle In: XIIth AAAP Animal Science Congress 2006 held in Busan, Korea, 18-22 September, 2006.. 339
  • HANOTTE, O, JIANLIN, H, 2006. Genetic Characterization of livestock population and its use in conservation decision-making. In: RUANE, J, SONNIONO, A, ed., ’The role of biotechnology in exploring and protecting agricultural genetic resources F.A.O. Rome.
  • MUEMA, E.K., WAKHUNGU, J.W., HANOTTE, O. and JIANLIN, H., 2006. Assessment of genetic diversity and structure of indigenous goats of sub-Saharan Africa In: 30th International Conference on Animal Genetics, ISAG 2006 held in Porto Seguro, Brazil, 20-25 August 2006.. 24 (A134)
  • FREEMAN, ABIGAIL R, HOGGART, CLIVE J, HANOTTE, O and BRADLEY, DANIEL G, 2006. Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism. Genetics. 173(3), 1503-10
  • AQUINO, G.M.B., LAUDE, R.P., SEVILLA, C.C., JIANLIN, H. and HANOTTE, O., 2006. Molecular characterization of beef (zebu) cattle (Bos indicus L.) in agroecological zones of the Philippines In: Second Molecular Biology and Biotechnology Symposium held in University of the Philippines, Los Banos, Laguna, Philippines, 4. 10-11
  • HIRBO, J, MUIGAI, A, NAQVI, A N, REGE, J E O, HANOTTE, O, 2006. The Genetic Diversity of Trans-caucasian Native Sheep Breeds Asian-Australian Journal of Animal Science. 19(7), 943-52
  • O'GORMAN, GRACE M, PARK, STEPHEN D E, HILL, EMMELINE W, MEADE, KIERAN G, MITCHELL, LAURA C, AGABA, MORRIS, GIBSON, JOHN P, HANOTTE, OLIVIER, NAESSENS, JAN, KEMP, STEPHEN J and MACHUGH, DAVID E, 2006. Cytokine mRNA profiling of peripheral blood mononuclear cells from trypanotolerant and trypanosusceptible cattle infected with Trypanosoma congolense. Physiological Genomics. 28(1), 53-61
  • GIBSON, J P, AYALEW, W, HANOTTE, O, 2006. Measures of Diversity as Inputs for Decisions in Conservation of Livestock Genetic Resources. In: JARVIS, D I, PADOCH, C, COOPER, D, ed., Managing Biodiversity in Agroecosystems Columbia University Press. (In Press.)
  • YEON, S.H., CHO, C.Y., JIN, H.J., KIM, C.D., LEE, S.S., WEE, M.S., KIM, Y.K., JIANLIN, H. and HANOTTE O., 2006. Variation on the cytochrome b gene of mitochondrial DNA in chicken, including Korean natives In: XIIth AAAP Animal Science Congress 2006 held in Busan, Korea, 18-22 September, 2006.. 380
  • MEADOWS, J R S, HANOTTE, O, DRÖGEMÜLLER, C, CALVO, J, GODFREY, R, COLTMAN, D, MADDOX, J F, MARZANOV, N, KANTANEN, J and KIJAS, J W, 2006. Globally dispersed Y chromosomal haplotypes in wild and domestic sheep. Animal genetics. 37(5), 444-53
  • KUGONZA, D.R., KIWUWA, G.H., MUTETIKKA, D., OKEYO, M. and HANOTTE, O., 2005. Ankole cattle breed of Uganda: functions and criteria for identification, selection and parentage assignment by herdsmen In: Proceedings of the 6th Global Conference on the Conservation of Domestic Animal Genetic Resource held in North-West Province, South Afric.
  • CHENYAMBUGA, S.W., KIFARO, G.C., GWAKISA, P.S., HANOTTE, O and REGE, J.E.O, 2005. Inference of population of origin of individual animals from different Small East African Goat populations using microsatellite markers In: Proceedings of the 4th All Africa Conference on Animal Agriculture and 31st Annual Meeting of the Tanzania Society for Animal Production (TSAP) held in Arusha, Tanzania. 50
  • HOEVEN, E., FIDALIS, M.N., LEAK, S., GEERTS, S., HANOTTE, O. and JIANLIN, H., 2005. Introgression of the Sahelian breed into West African Dwarf goats (L’introgression de la race Sahélienne chez les chèvres naines de l'Afrique de l'Ouest) In: Proceedings of 28th Meeting of the International Scientific Council for Tropanosomiasis Reseach and Control held in Addis Ababa, Ethipia. XX
  • DESSIE T, GUTAHUM, E., MAMO, Y., REGE, J.E.O., HANOTTE, O. and AYALEW, W., 2005. Delivering systematic information on indigenous farm animal genetic resources of Africa In: Proceedings of the 4th All Africa Conference on Animal Agriculture and 31st Annual Meeting of the Tanzania Society for Animal Production (TSAP) held in Arusha, Tanzania. 52
  • YUZHU, L, SHURU, C, LKHAGVA, B, BADAMDORJ, D, HANOTTE, O, JIANLIN, H, 2005. Study on origin and genetic diversity of Mongolian and Chinese sheep using Mitochondrial DNA D-loop sequences Acta Genetica Sinica: (in Chinese). 32, 12
  • WAFULA, P.O, JIANLIN, H, SANGARE, N, SOWE, J.M, COLY, R, DIALLO, B and HANOTTE, O., 2005. Genetic characterization of West African Djallonke sheep using micorsatellite markers In: ’The role of biotechnology for the characterization and conservation of crop, forestry, animal and fishery genetic resources, Turin, Italy. 179-80
  • KUGONZA, D.R., JIANLIN, H., MWAI, O.A., KIWUWA, G.H. and HANOTTE, O., 2005. Use of microsatellite markers to evaluate parentage and kinship assignment of Ugandan Ankole cattle by pastoralists In: 6th Global Conference on Conservation of Domestic Animal Genetic Resources held in North-West Province, South Africa. XX
  • XUEBIN, Q, JIANLIN, H, LKHAGVA, B, CHEKAROVA, I, BADAMDORJ, D, REGE, J E O and HANOTTE, O, 2005. Genetic diversity and differentiation of Mongolian and Russian yak populations. Journal of Animal Breeding and genetics. 122(2), 117-26
  • MUIGAI, A.W.T., HIRBO, J., REGE, J.E.O. and HANOTTE O., 2005. Origin and migration of sub-Saharan Africa domestic sheep In: Proceedings of the 4th All Africa Conference on animal Agriculture and 31st Annual Meeting of the Tanzania Society for Animal Production held in Arusha, Tanzania. 95
  • BHUIYAN, M S A, HANOTTE, O, BHUIYAN, A K F H, 2005. ). Genetic diversity of red Chittagong cattle of Bangladesh using microsatellite markers Progressive Agriculture. 16(1), 141-48
  • KUGONZA, D., JIANLIN, H, OKEYO, M., KIWUWA, G. and HANOTTE, O., 2005. Microsatellite DNA polymorphism of the long-horned Ankole cattle in Uganda In: Proceedings of the 4th All Africa Conference on animal Agriculture and 31st Annual Meeting of the Tanzania Society for Animal Production (TSAP) held in Arusha, Tanzania. 49
  • HILL, EMMELINE W, O'GORMAN, GRACE M, AGABA, MORRIS, GIBSON, JOHN P, HANOTTE, OLIVIER, KEMP, STEPHEN J, NAESSENS, JAN, COUSSENS, PAUL M and MACHUGH, DAVID E, 2005. Understanding bovine trypanosomiasis and trypanotolerance: the promise of functional genomics. Veterinary Immunology and Immunopathology. 105(3-4), 247-58
  • KOUDANDE, O.D., DOSSOU-GBETE, G., FIDALIS, M., KIBOGO, H., MBURU, D., MENSAH, G.A., HANOTTE, O. and VAN ARENDONK, J.A.M., 2005. Cattle genetic diversity assessment in the coastal region of the Bight of Benin In: Proceedings of the 4th All Africa Conference on animal Agricultre and 31st Annual Meeting of the Tanzania Society for Animal Production held in Arusha, Tanzania. 93
  • SHURU, C, JIANLIN, H, HANOTTE, O, YUZHU, L, 2005. Genetic diversity of Chinese domestic sheep using mitochondrial DNA D-loop Journal of Gansu Agricultural University: (in Chinese). 40, 440-47
  • MBURU, D, and HANOTTE, O., 2005. Comparative genetic analysis of molecular diversity of African cattle In: ’The role of biotechnology for the characterization and conservation of crop, forestry, animal and fishery genetic resources, Turin, Italy. 189-90
  • MUEMA, E.K., WAKHUNGU, J.W., HANOTTE, O. and JIANLIN, H., 2005. Genetic diversity and relationship of indigenous goats of sub-Saharan Africa using Microsatellite DNA markers In: Proceedings of the 4th All Africa Conference on animal Agricultre and 31st Annual Meeting of the Tanzania Society for Animal Production held in Arusha, Tanzania. 94
  • CHENYAMBUGA, S, W, HANOTTE, O, HIRBO, J, WATTS, P C, KEMP, S J, KIFARO, G C, GWAKISA, P S, PETERSON, P H, REGE, J E O, 2004. Genetic characterization of indigenous goats of sub-Saharan Africa using microsatellite DNA markers Asian-Australian Journal of Animal Science. 17, 445-52
  • CHO, C, JIANLIN, H, HANOTTE, O, YEON, S, KIM, J, JIN, H, KIM, Y, AMANO, T, 2004. Genetic diversity in Asia, Africa and Austrialia goats In: Book of Abstracts of the XXXIX International Conference on Animal Genetics. 11-16
  • GOLDAMMER, TOM, ROTTENGATTER, KARIN, WEIKARD, ROSEMARIE, HORSTMANN, ROLF, GEHLHAUS, ANNETTE, BRUNNER, RONALD M, HANOTTE, OLIVIER and SCHWERIN, MANFRED, 2004. Targeted generation of 16 sequence-tagged sites for bovine chromosome region 5q21-q25 by microdissection. Chromosome Research. 12(4), 309-15
  • ALEMU, T, FIDALIS, M N, HOEVEN, E, YADAV, B R, HANOTTE, O, JIANLIN, H, 2004. Genetic characterization of indigenous goat populations of Ethiopia using microsatellite DNA markers. Book of Abstracts of the XXIX In: International Conference on Animal Genetics, Tokyo, Japan.
  • KUGONZA, D R, NATUMANYA, R, JIANLIN, H, KIWUWA, G H, HANOTTE, O, 2004. Genetic diversity, differentiation and kinship analysis of Ugandan Ankole cattle populations using autosomal microsatellite markers. Book of Abstracts of the XXIX In: International Conference on Animal Genetics, Tokyo, Japan.
  • XUEBIN, Q, JIANLIN, H, REGE, J E O, HANOTTE, O, 2004. Mitochondrial DNA evidences for multiple origin of domestic yak. Book of Abstracts of the XXIX In: International Conference on Animal Genetics, Tokyo, Japan.
  • FIDALIS, M N, HOEVEN, E, ALEMU, T, GEERTS, S, NJAGI, E, LEAK S, HANOTTE, O, JIANLIN, H, 2004. Genetic characterisation of the West African Dwarf goat. Book of Abstracts of the XXIX In: International Conference on Animal Genetics, Tokyo, Japan..
  • JIANLIN, H, OCHIENG, J W, LKHAGVA, B, HANOTTE, O, 2004. Genetic diversity and relationships of domestic Bactrian camels Camelus bactrianus in China and Mongolia Journal of Camel Research. 11(2), 97-99
  • HOFFMANN, I, AJMONE,M P, BARKER, S J, COTHRAN, E G, HANOTTE, O, LENSTRA, J A, MILAN D, WEIGEND, S, SIMIANER, H, 2004. New MoDAD marker sets to be used in diversity studies for the major farm animal species, reommendations of a joint ISAG/FAO working group In: Book of Abstracts of the XXXIX International Conference on Animal Genetics. 11-16
  • BAKER, R. L., GIBSON, J. P., IRAQI, F. A., MENGE, D. M., MUGAMBI, J. M., HANOTTE, O., NAGDA, S., WAKELIN, D. and BEHNKE, J. M., 2003. Exploring the genetic control of resistance to gastrointestinal helminth infections in sheep and mice PROCEEDINGS OF THE CONFERENCE- ASSOCIATION FOR THE ADVANCEMENT OF ANIMAL BREEDING AND GENETICS. 15TH, 183-190
  • DORJI, T, REGE, J E O, HANOTTE, O, RODER, W, 2003. Indigenous sheep genetic resources and management in Bhutan Animal Genetic Resources Information. 33, 81-91
  • BAKER, R L, GIBSON, J P, IRAWI, F A, MENGEM, D M, MUGAMBI, J M, HANOTTE, O, NAGDA, S, BEHNKE, J M, 2003. Exploring the genetic control of resistance to gastrointestinal helminth infection in sheep and mice In: Proceedings of the 15th Conference of the Association for the Advancement of Animal Breeding and Genetics, Melbourne, Australia. 183-89
  • LKHAGVA, B, OCHIENG, J W, YOON, D H, HANOTTE, O, JIANLIN, H, 2003. Genetic diversity and differentiation of Mongolian indigenous cattle populations In: Proceedings of the FAO/IAEA International Symposium on Application of Gene Based Technologies for Improving Animal Production and Health in Developing Countries held in Vienna, Austria. 19-21
  • NIJMAN, I J, OTSEN, M, DE RUIJTER, E C, HANEKAMP, E, HANOTTE, O, LENSTRA, J A, 2003. Hybrid origin of Madura and Bali cattle populations revealed by mitochondrial DNA, satellite DNA and AFLP Journal of Heredity. 90, 10-16
  • SIMIANER, H, MARTI, S B, GIBSON, J, HANOTTE, O, REGE, J E O, 2003. An approach to the optimal allocation of conservation funds to minimize loss of genetic diversity between livestock breeds Ecological Economics. 45, 377-92
  • VAN DER WAAIJ, HANOTTE, O, VAN ARENDONK, J A M, KEMP, S J, KENNEDY, D, GIBSON, J, TEALE, A, 2003. Population parameters for traits defining trypanotolerance in an F2 cross of N’Dama and Boran cattle Livestock Production Science. 84, 219-30
  • AUTHIE, E, MAILLARD, J C, HANOTTE, O, 2003. Trypanosomoses – Trypanotolerance. In: LEFÈVRE, P C, BLANCOU, J, CHERMETTE, R, ed., Maladies infectieuses et parasitaires du bétail des régions chaudes (in French). Editions TEC et DOC-Lavoisier, Paris. 1725-37
  • MBURU, D N, OCHIENG, J W, KURIA, S G, JIANLIN, H, KAUFMANN, B, REGE, J E O and HANOTTE, O, 2003. Genetic diversity and relationships of indigenous Kenyan camel (Camelus dromedarius) populations: implications for their classification. Animal genetics. 34(1), 26-32
  • HANOTTE, O, RONIN, Y, AGABA, M, NILSSON, P, GELHAUS, A, HORSTMANN, R, SUGIMOTO, Y, KEMP, S, GIBSON, J, KOROL, A, SOLLER, M and TEALE, A, 2003. Mapping of quantitative trait loci controlling trypanotolerance in a cross of tolerant West African N'Dama and susceptible East African Boran cattle. Proceedings of the National Academy of Sciences of the United States of America. 100(13), 7443-8
  • MARTI, S B, SIMIANER, H, GIBSON, J, HANOTTE, O, REGE, J E O, 2003. Weitzman’s approach and livestock conservation: An application to African cattle breeds Conservation Biology. 17(5), 1-14
  • KIERSTEIN, G, MBURU, D N, MUIGAI, A W T, JIANLIN, H, REGE, J E O, HANOTTE, O, 2003. Understanding the Genetic Diversity of Livestock: an Essential Step for the Management and Improvement of Farmers' Resources: Wollny, C, Deininger, A, Bhandari, N, Maas, B, Manig, W, Muuss, U, (Eds.) In: Deutscher Tropentag, Göttingen, Germany. 154
  • MBURU, D N, OCHIENG, J W, KURIA, S G, JIANLIN, H, KAUFMANN, B, REGE, J E O, HANOTTE, O, 2003. Genetic Diversity and relationships of indigenous Kenyan camel Camelus dromedarius populations: implications for their classification Animal Genetics. 34, 26-32
  • DORJI, T, HANOTTE, O, ARBENZ, M, REGE J E O, RODER, W, 2003. Genetic diversity of indigenous cattle population in Bhutan: implications for conservation Asian-Australian Journal of Animal Science. 16(7), 946-51
  • HANOTTE, O, MBURU, D, 2002. Genetic diversity and relationship of indigenous Kenyan camel population. In: HÜLSEBUSCH, C.G, KAUFMANN, B A, ed., Camel breeds and breeding in Northern Kenya Kenya Agricultural Research Institute (KARI), Nairobi Kenya. 109-18
  • HANOTTE, O, KOROL, A, AGABA, M, NILSSON, P, GELHAUS, A, HORSTMANN, R, SUGIMOTO, Y, KEMP, S, GIBSON, J, SOLLER M, TEALE, A, 2002. Mapping of QTL controlling resistance to trypanosomosis in N’Dama x Boran cattle In: 7th World Congress on Genetics Applied to Livestock Production, Montpellier, France. 623-26, Volume 31
  • HANOTTE O., BRADLEY D.G., OCHIENG J., VERJEE Y., HILL E.W. and REGE J.E.O., 2002. African pastoralism: geneitc imprints of origins and migrations Science. 296, 336-339
  • LANK, D A, SMITH, C M, HANOTTE, O, OHTONEN, A, BAILEY, S, BURKE, T, 2002. High frequency of polyandry in a lek mating system Behavioural Ecology. 13, 203-15
  • CHENYAMBUGA, S W, WATTS, P C, HIRBO, J, KEMP, S J, HANOTTE, O, KIFARO, G C, GWAKISA, P S, REGE, J E O, PETERSEN, P H, 2002. Analysis of genetic diversity and relationships of Tanzanian local goat populations using microsatellite DNA markers Tanzania J. Agric. Sci.. 5, 29-38
  • XUEBIN, Q, JIANLIN, H, REGE, E, HANOTTE, O, 2002. Y-chromosome specific microsatellite polymorphisms in Chinese yak In: 7th World Congress on Genetics Applied to Livestock Production, Montpellier, France,. 509-512, Volume 33
  • YOON, D H, OCHIENG, J W, LEE, H K, OH, S J, CHO, B W, CHEONG, I C, HANOTTE, O, 2002. Genetic diversity and relationships of three Eastern Asian cattle breeds In: 7th World Congress on Genetics Applied to Livestock Production, Montpellier, France. 577-580, Volume 33
  • HANOTTE, O, MENSAH, G A, 2002. Biodiversity and domestication of ‘non-conventional’ species: a worldwide perspective In: 7th World Congress on Genetics Applied to Livestock Production, Montpellier, France. 543-46, Volume 30
  • MUIGAI, A W, HIRBO, J, REGE, J E O, BLACKBURN, H, HANOTTE, O, 2002. Genetic diversity and relationships of hair sheep of the Americas: First results In: 7th World Congress on Genetics Applied to Livestock Production, Montpellier, France. 573-76, Volume 33
  • WAMBUGU, J, KANGUHA, E, HANOTTE, O, DAVIS, S, TAYLOR, J, SKOW, L, TEALE, A, IRAQI, F,, 2001. Identification of two polymorphic microsatellite repeats on a bovine TNF-alpha containing BAC clone Animal Genetics. 32, 105-06
  • MBURU, D N, OCHIENG, J, KAUFMANN, B, KURIA, S G, REGE, J E, HANOTTE, O, 2001. Genetic diversity and relationship of indigenous Kenyan camel breeds: Preliminary results: Abdulrazak, S A, Mwangi, D, Mukisira, E A (eds) In: Proceedings of the Animal production Society of Kenya ‘The challenges of drought to livestock production in Kenya’.
  • JIANLIN, H, OCHIENG, O, REGE, J E O, HANOTTE, O, 2000. Low level of cattle introgression in yak populations from Bhutan and China: Evidences from Y-specific microsatellites and mitochondrial DNA markers In: Proceedings of the 3rd International Congress on Yak, Lhasa, Tibet, P R China.
  • JIANLIN, H, MBURU, D, OCHIENG, J, KAUFMANN, B, REGE, J E O, HANOTTE, O,, 2000. Application of New World Camelidae microsatellite primers for amplification of polymorphic loci in Old World camelids Animal Genetics. 31, 405-06
  • REGE, J E O, HANOTTE, O, 2000. Indigenous African livestock resource: the little known, underutilized and endangered ‘breed: ‘Challenges to Animal Production in the New Millenium’ (ed. J. N. Kariuki) In: Proceedings of the Animal production Society of Kenya, Nairobi. 45-53
  • CHENYAMBUGA, S W, WATTS, P C, HIRBO, J, GWAKISA, P S, KIFARO, G C, KEMP, S J, HANOTTE, O, REGE, J E O, 2000. Assessment of genetic diversity of east African goat populations using microsatellite DNA markers In: Proceedings of the 3rd All Africa Conference on Animal Agriculture and 11th Conference of the Egyptian Society of Animal Production. 87-93, Volume 1, Part 1
  • HANOTTE, O, REGE, J E O, 2000. Origins, history and relationships of indigenous African cattle In: Proceedings of the 3rd All Africa Conference on Animal Agriculture / Proceedings of the 3rd All Africa Conference on Animal Agriculture / 11th Conference of the Egyptian Society of Animal Production, Alexandria (Egypt). 43-46 Volume 1, Part 2
  • DAWSON, D A, HANOTTE, O, GREIG, C, STEWART, I R K, BURKE, T, 2000. Polymorphic microsatellites in the blue tit Parus caeruleus and their cross-species utility in twenty songbird families Molecular Ecology. 9, 1941-44
  • HANOTTE, O, TAWAH, C L, BRADLEY, D, OKOMO, M, VERJEE, Y, OCHIENG, J, REGE, J E O, 2000. Geographic distribution and frequency of B. taurus and Bos indicus Y chromosome haplotype amongst sub-Saharan African cattle breeds Molecular Ecology. 9, 387-96
  • SCHMIDT, P, KUHN, CH, KANGA'A, S, HANOTTE, O, VANSELOW, J, ANTON, I, LANGNER, CH, SCHWERIN, M, 2000. Interleukin-12 p35 gene of cattle and sheep harbours a polymorphic T strech in intron 4.2 Animal Genetics. 31, 283-85
  • LAGZIEL, A S, DENISE, O, HANOTTE, O, DHARA, S, GLAZKO, V, BROADHEAD, A, DAVOLI, R, RUSSO, SOLLER, M, 2000. Geographic and breed distribution of an MspI PCR-RFLP in the bovine growth hormone (bGH) gene Animal Genetics. 31, 210-13
  • MUIGAI, A W, WATTS P C, HIRBO J, IMBUGA M, INIGUEZ, L, KEMP S, HANOTTE O, REGE J E O, 2000. Assessment of the genetic diversity and relationships in African fat-tailed sheep: preliminary results In: Assessment of the genetic diversity and relationships in African fat-tailed sheep: preliminary results. 87-93, Volume 1, Part 1
  • NIJMAN, I J, BRADLEY, D G, HANOTTE, O, OTSEN, M, LENSTRA, J A, 1999. Satellite DNA polymorphisms that correlate with Bos indicus-taurus hybridization Animal Genetics. 30, 265-73
  • PARK, S D E, ADOMEFA, K, DAO, B, HANOTTE, O, KEMP, S J, SOW, R, TEALE, A. J, BRADLEY, D G, 1999. Application of population genetic analysis of linked, mapped microsatellites to the identification of loci under selection for disease resistance In: Proceedings of the International Symposium “Candidate Genes for Animal Health, Rostock/Germany. 97-99 Arch. Tierz, Dummerstorf 42, Special Issue
  • GOLDAMMER, T, BRUNNER, R M, KANG'A, S, HANOTTE, O, SCHWERIN, M, 1999. Establishment of bovine chromosome region specific high resolution maps using microdissection Animal Biotechnology. 10, 113-18
  • GELHAUS, A, HANOTTE, O, HORSTMANN, R, TEALE, A, 1999. Linkage mapping of the bovine lysomal alpha-mannosidase (ManB) gene Animal Genetics. 30, 228-29
  • NILSSON, PH, KANG’A, S, ROTTENGATTER, K, SUEBECK, U, IRAQI, F, MWAKAYA, J, MWANGI, D, WOMACK, J E, GOLDAMMER, T, SCHWERIN, M, BRADLEY, D, AGABA, M, SUGIMOTO, K, GELHAUS, A, HORSTMANN, R, TEALE,, 1999. Radiation hybrid maps of candidate trypanotolerance regions in cattle In: Proceeding of the International Symposium “Candidate Genes for Animal Health, Rostock/Germany. 123-25 Special Issue
  • GOLDAMMER, T, BRUNNER, R M, KANG’A, S, HANOTTE, O, SCHWERIN, M, 1999. Generation of a bovine BAC pool for chromosome region BTA7q14-22 correlated to the trait trypanotolerance In: Proceeding of the International Symposium “Candidate Genes for Animal Health, Rostock/Germany. 150-52 Arch. Tierz. Dummerstorf 42, Special Issue
  • VAN HOOFT, W F, HANOTTE, O, WENINK, P W, GROEN, A F, SUGIMOTO, Y, PRINS, H H T, TEALE, A, 1999. Applicability of bovine microsatellite markers for population genetic studies on African buffalo (Syncerus caffer) Animal Genetics. 30, 214-220
  • TEALE, A, AGABA, M, CLAPCOTT, S T, GELHAUS. A, HALEY, C H, HANOTTE, O, HORSTMANN, R, IRAQI, F, KEMP, S T, NILSSON, P, SCHWERIN, M, SEKIKAWA, K, SOLLER, M, SUGIMOTO, Y, WOMACK, J, 1999. Resistance to trypanosomosis: of markers, genes and mechanisms In: Proceedings of the International Symposium “Candidate Genes for Animal Health, Rostock/Germany. 36-41 Arch. Tierz. Dummerstorf 42, Special Issue
  • OKOMO, M, REGE, J E O, TEALE, A, HANOTTE, O, 1998. Genetic Characterization of East African indigenous cattle breeds using microsatellite DNA markers In: Proc. of the 6th World Congress on Genetics Applied to Livestock production, Armidale, Australia. 243-46
  • KING, T M, HANOTTE, O, BURKE, T, WALLIS, G P, 1998. Characterization of four microsatellite loci in tree weta (Orthoptera: Stenopelmatisae): their potential usefulness for the study of Hemideina. Molecular Ecology. 7, 663-64
  • HANOTTE, O, VERJEE, Y, OCHIENG, O, TEALE, A, REGE, E, 1998. Usefulness of cattle microsatellite markers for amplification of polymorphic loci in Asian bovidae In: Proceedings of the Fourth Global Conference on Conservation of Domestic Animal Genetic Resources (ed. J. N. Shrestha). 47-49
  • BRUFORD M W, HANOTTE O, BROOKFIELD, J F Y, BURKE, T, 1998. Single locus and multilocus DNA fingerprinting. In: HOELZEL, A R, ed., Molecular Genetic Analysis of Populations: A Practical Approach Second Edition. IRL Press, Oxford. 287-336
  • KIMWELE, C N, GRAVES, J A, BURKE, T, HANOTTE, O, 1998. Development of microsatellite markers for parentage typing of chicks in the ostrich Struthio camelus Molecular Ecology. 7, 249-51
  • HANOTTE, O, PUGH, A, MAUCHER, C, BURKE, T, 1997. Nine novel chicken microsatellite loci and their utility in other Galliformes Aninal Genetics. 28, 311-13
  • TABERLET, P, CAMARRA, J J, GRIFFIN, S, UHRES, E, HANOTTE, O, WAITS, L P, DUBOIS-PAGANON, BURKE, T, BOUVET, J, 1997. Noninvasive genetic tracking of the endangered Pyrenean brown bear population Molecular Ecology. 6, 869-76
  • HANOTTE, O, OKOMO, M, VERJEE, Y, REGE, E, TEALE, A, 1997. A polymorphic Y chromosome microsatellite locus in cattle Animal Genetics. 28, 318-19
  • HISHIDA, O, HANOTTE, O, VERJEE, Y, TANAKA, K, NAMIKAWA, T, TEALE, A, REGE, J E O, 1996. Cross-species amplification and polymorphism of microsatellite loci in Asian bovidae In: Proceedings of the 8th Animal Science Congress of AAAP, 13-18 October 1996, Tokyo, Japan. 354-55
  • ALATALO, R V, BURKE, T, DANN J, HANOTTE, O, HOGLUND, J, LUNDBERG, A, MOSS, R, RINTAMAKI, P T, 1996. Paternity, lekking disturbance and female choice in lekking black grouse Animal Behaviour. 52, 861-73
  • TARAWALI, S A, REGE, E, HANOTTE, O, HANSON, J, 1996. DNA Markers for forage and livestock improvement: DNA marker-assisted improvement of the staple crops of sub-Saharan Africa In: Proceedings of the workshop on DNA Markers at IITA, Ibadan, Nigeria.
  • BURKE, T, HANOTTE, O, VAN PIJLEN, I, 1996. Minisatellites analysis in conservation genetics. In: SMITH, T B, WAYNE, R K, ed., Molecular Genetic Approaches in Conservation Oxford University Press, New York. 251-57
  • LOWE, A J, HANOTTE, O, CUARINO, L, 1996. Standardisation of molecular genetic techniques for the characterisation of germplasm collections: The case for Random Amplified Polymorphic DNA (RAPD) Plant Genetic Resources: Newsletter. 107, 50-54
  • MIYAKI, C Y, HANOTTE, O, WJNTAL, A, BURKE, T, 1995. DNA fingerprinting in the endangered parrot Aratinga guarouba and other Aratinga species Brazilian Journal of Genetics. 18(3), 405-11
  • LANK, D B, SMITH, C M, HANOTTE, O, BURKE, T, COOKE, F, 1995. Genetic polymorphism for alternative mating strategies in lekking male ruff, Philomachus pugnax Nature. 378, 59-62
  • HANOTTE, O., ZANON, C., PUGH, A., CREIG, C., DIXON, A. and BURKE, T., 1994. Isolation and characterization of microsatellite loci in a passerine bird: the reed bunting Emberiza schoeniclus Molecular Ecology. 3, 529-530
  • BRUFORD, M, HANOTTE, O, BURKE, T, 1994. Minisatellite markers in the chicken genome. II Isolation and characterization of minisatellite loci Animal Genetics. 25, 391-99
  • HANOTTE, O, ZANON, C PUGH, A, GREIG, C, DIXON, A, BURKE, T, 1994. Isolation and characterization of microsatellite loci in a passerine bird: the reed bunting Emberiza schoeniclus Molecular Ecology. 3, 529-30
  • PINXTEN, R, HANOTTE, O, EENS, M, VERHEYEN, R F, DHONDT, A A, BURKE, T, 1993. Extra-pair paternity and intraspecific brood parasitism in the European starling, Sturnus vulgaris: evidence from DNA fingerprinting Animal Behaviour. 45, 795-809
  • MIYAKI, C Y, HANOTTE, O, WAJNTAL, A, BURKE, T, 1993. Characterization and application of multilocus DNA fingerprints in Brazilian endangered macaws. In: PENA, S D J,, ed., et al DNA Fingerprinting: State of Science Birkhäuser Verlag, Basel. 395-401
  • HANOTTE, O, BRUFORD, M W, BURKE, T, 1992. Multilocus DNA fingerprints in gallinaceous birds: general approach and problems Heredity. 68, 481-94
  • BRUFORD, M W, HANOTTE, O, BROOKFIELD, J F Y, BURKE, T, 1992. Single locus and multilocus DNA fingerprinting. In: HOELZEL, A R, ed., Molecular Genetic Analysis of Populations: A Practical Approach Press, Oxford. 225-69
  • HANOTTE, O, CAIRNS, E, ROBSON, T, BURKE, T, 1992. Cross-species hybridization of a single-locus minisatellite probe in passerine birds Molecular Ecology. 1, 127-30
  • HANOTTE, O, BRUFORD, M W, BURKE, T, 1992. Multilocus DNA fingerprints in gallinaceous birds: general approach and problems Heredity. 68, 481-94
  • MIYAKI, C Y, HANOTTE, O, WAJNTAL, A, BURKE, T, 1992. Sex typing of Aratinga parrots using the human minisatellite probe 33.15 Nucleic Acids Research. 19, 5235-5236
  • BURKE, T, HANOTTE, O, BRUFORD, M W, CAIRNS, E,, 1991. Multilocus and single locus minisatellite analysis in population biological studies. In: BURKE, T, DOLF, G, JEFFREYS, A J, WOLFF, R,, ed., DNA Fingerprinting: Approaches and Applications Birkhauser Verlag, Basel. 193-216
  • HANOTTE, O, BURKE, T, ARMOUR, J A L, JEFFREYS, A J, 1991. Hypervariable minisatellite DNA sequences in the Indian peafowl Pavo Cristatus Genomics. 9, 587-97
  • BRUFORD, M W, BURKE, T, HANOTTE, O, SMILEY, M B, 1990. Hypervariable markers in the chicken genome In: Proc. of the 4th World Congress on Genetics Applied to Livestock production, Edinburgh. 139-142, XIII
  • HANOTTE, O, KNOX, A G, PRIOGOGINE, A, 1987. The Taxonomic status of Nicator: evidence from feather protein electrophoresis Biochem. Syst. and Ecology. 15(5), 629-34 (In Press.)
  • HANOTTE, O, DEJAIFFE, C, DUBOIS, D, VANDERPOORTEN, P, MENOZZI, F, MILLER, A, 1987. Growth of animal cells on microbeads. II Estimation of biomass in situ and observation of cytopathic effects after infection of McCoy cells with Chlamydia Trachomatis Biology of the Cell. 59, 175-80
  • MENOZI, F D, HANOTTE, O AND MILLER, A O A, 1985. Stimulation of protein accumulation in HeLa cells by inhibitors of DNA replication FEBS Letters. 193(1), 49-53
  • SOUDRE, ALBERT, OUEDRAOGO-KONE, SALIFOU, WURZINGER, MARIA, MULLER, SIMONE, HANOTTE, OLIVIER, OUEDRAOGO, ANICET GEORGES and SOLKNER, JOHANN, Trypanosomosis: a priority disease in tsetse-challenged areas of Burkina Faso. Tropical animal health and production. 45(2), 497-503
  • WRAGG, DAVID, MWACHARO, JORAM M., ALCALDE, JOSE A., WANG, CHEN, HAN, JIAN-LIN, GONGORA, JAIME, GOURICHON, DAVID, TIXIER-BOICHARD, MICHELE and HANOTTE, OLIVIER, Endogenous Retrovirus EAV-HP Linked to Blue Egg Phenotype in Mapuche Fowl PLOS ONE. 8(8),

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