POUND, MICHAEL P., ATKINSON, JONATHAN A., WELLS, DARREN M., PRIDMORE, TONY P. and FRENCH, ANDREW P., 2017. Deep Learning for Multi-task Plant Phenotyping 2017 IEEE INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW 2017). 2055-2063 MICHAEL POUND, JONATHAN ATKINSON, ALEXANDRA TOWNSEND, MICHAEL WILSON, MARCUS GRIFFITHS, AARON JACKSON, ADRIAN BULAT, GEORGIOS TZIMIROPOULOS, DARREN WELLS, ERIK MURCHIE, TONY PRIDMORE and ANDREW FRENCH, 2017. Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping Gigascience. gix083 LUENGO, IMANOL, DARROW, MICHELE C., SPINK, MATTHEW C., SUN, YING, DAI, WEI, HE, CYNTHIA Y., CHIU, WAH, PRIDMORE, TONY, ASHTON, ALUN W., DUKE, ELIZABETH M. H., BASHAM, MARK and FRENCH, ANDREW P., 2017. SuRVoS: Super-Region Volume Segmentation workbench JOURNAL OF STRUCTURAL BIOLOGY. 198(1), 43-53 BURRELL T, FOZARD S, HOLROYD GH, FRENCH AP, POUND MP, BIGLEY CJ, JAMES TAYLOR C and FORDE BG, 2017. The Microphenotron: a robotic miniaturized plant phenotyping platform with diverse applications in chemical biology. Plant methods. 13, 10 POUND, MICHAEL P., FOZARD, SUSAN, TORRES, MERCEDES TORRES, FORDE, BRIAN G. and FRENCH, ANDREW P., 2017. AutoRoot: open-source software employing a novel image analysis approach to support fully-automated plant phenotyping PLANT METHODS. 13(12), GIBBS, JONATHON A., POUND, MICHAEL, FRENCH, ANDREW P., WELLS, DARREN M., MURCHIE, ERIK and PRIDMORE, TONY, 2017. Approaches to three-dimensional reconstruction of plant shoot topology and geometry FUNCTIONAL PLANT BIOLOGY. 44(1), 62-75 SCHARR, HANNO, DEE, HANNAH, FRENCH, ANDREW P. and TSAFTARIS, SOTIRIOS A., 2016. Special issue on computer vision and image analysis in plant phenotyping MACHINE VISION AND APPLICATIONS. 27(5), 607-609 LUENGO, IMANOL, BASHAM, MARK and FRENCH, ANDREW P., 2016. Selective Labeling: Identifying Representative Sub-volumes for Interactive Segmentation PATCH-BASED TECHNIQUES IN MEDICAL IMAGING, PATCH-MI 2016. 9993, 17-24 POUND, MICHAEL, FRENCH, ANDREW and FORDE, BRIAN, 2016. AutoRoot: fully-automated plant root phenotyping Zenodo.
HANNO SCHARR, MASSIMO MINERVINI, ANDREW P. FRENCH, CHRISTIAN KLUKAS, DAVID M. KRAMER, XIAOMING LIU, IMANOL LUENGO, JEAN-MICHEL PAPE, GERRIT POLDER, DANIJELA VUKADINOVIC, XI YIN and SOTIRIOS A. TSAFTARIS, 2016. Leaf segmentation in plant phenotyping: a collation study Machine Vision and Applications. 27(4), 585-606 MICHAEL POUND, ALEXANDRA J BURGESS, MICHAEL H WILSON, JONATHAN A ATKINSON, MARCUS GRIFFITHS, AARON S JACKSON, ADRIAN BULAT, GEORGIOS TZIMIROPOULOS, DARREN M WELLS, ERIK H MURCHIE, TONY P PRIDMORE and ANDREW P FRENCH, 2016. Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping Biorxiv. Available at: <http://biorxiv.org/content/early/2016/05/12/053033> LUENGO, IMANOL, BASHAM, MARK and FRENCH, ANDREW P, 2016. Hierarchical Piecewise-Constant Super-regions arXiv preprint arXiv:1605.05937.
POUND, MICHAEL P.AND FRENCH, ANDREW P.AND FOZARD, JOHN A.AND MURCHIE, ERIK H.AND PRIDMORE, TONY P., 2016. A patch-based approach to 3D plant shoot phenotyping Machine Vision and Applications. 1-13 POUND, MICHAEL, FRENCH, ANDREW P. and WELLS, DARREN M., 2015. Quantification of Fluorescent Reporters in Plant Cells PLANT CELL EXPANSION: METHODS AND PROTOCOLS. 1242, 123-131 DEE, HANNAH and FRENCH, ANDREW, 2015. From image processing to computer vision: plant imaging grows up Foreword FUNCTIONAL PLANT BIOLOGY. 42(5), III-V ANDREW P FRENCH and MICHAEL P POUND, 2014. Analysis of Root Growth Using Image Analysis. In: S DUTTA GUPTA and YASUOMI IBARAKI, eds., Plant Image Analysis: Fundamentals and Applications CRC Press / Taoylor and Francis. 279-289 BAND, LEAH R., WELLS, DARREN M., FOZARD, JOHN A., GHETIU, TEODOR, FRENCH, ANDREW P., POUND, MICHAEL P., WILSON, MICHAEL H., YU, LEI, LI, WENDA, HIJAZI, HUSSEIN I., OH, JAESUNG, PEARCE, SIMON P., PEREZ-AMADOR, MIGUEL A., YUN, JEONGA, KRAMER, ERIC, ALONSO, JOSE M., GODIN, CHRISTOPHE, VERNOUX, TEVA, HODGMAN, T. CHARLIE, PRIDMORE, TONY P., SWARUP, RANJAN, KING, JOHN R. and BENNETT, MALCOLM J., 2014. Systems Analysis of Auxin Transport in the Arabidopsis Root Apex PLANT CELL. 26(3), 862-875 POUND, MICHAEL P., FRENCH, ANDREW P., MURCHIE, ERIK H. and PRIDMORE, TONY P., 2014. Automated Recovery of Three-Dimensional Models of Plant Shoots from Multiple Color Images PLANT PHYSIOLOGY. 166(4), 1688-U801 LARRIEU, ANTOINE P., FRENCH, ANDREW P., PRIDMORE, TONY P., BENNETT, MALCOLM J. and WELLS, DARREN M., 2014. Time-Profiling Fluorescent Reporters in the Arabidopsis Root PLANT CHEMICAL GENOMICS: METHODS AND PROTOCOLS. 1056, 11-17 POUND MP, FRENCH AP, MURCHIE E and PRIDMORE TP, 2014. Surface reconstruction of plant shoots from multiple views In: European Conference on Computer Vision (ECCV) Workshop on Computer Vision Problems in Plant Phenotyping.
MIGUEL-PACHECO, GIULIANA G., KALER, JASMEET, REMNANT, JOHN, CHEYNE, LYDIA, ABBOTT, CAROLINE, FRENCH, ANDREW P., PRIDMORE, TONY P. and HUXLEY, JONATHAN N., 2014. Behavioural changes in dairy cows with lameness in an automatic milking system Applied Animal Behaviour Science. 150(0), 1-8 BAND L, WELLS DM, FOZARD JA, GHETIU T, FRENCH AP, POUND MP, WILSON MH, YU L, LI W, HIJAZI H, OH J, PEARCE S, PEREZ-AMADOR MA, YUN J, KRAMER E, ALONSO JM, GODIN G, VERNOUX T, HODGMAN TC, PRIDMORE TP, SWARUP R, KING JR and BENNETT MJ, 2014. Systems Analysis of auxin transport in the Arabidopsis root apex Plant Cell. LARRIEU AP, FRENCH AP, PRIDMORE TP, BENNETT MJ and WELLS DM, 2014. Time-profiling fluorescent reporters in the Arabidopsis root. Methods in molecular biology (Clifton, N.J.). 1056, 11-17 MICHAEL P POUND, ANDREW P FRENCH, JONATHAN ATKINSON, DARREN M WELLS, MALCOLM J BENNETT and TONY P PRIDMORE, 2013. RootNav: Navigating images of complex root architectures: http://www.plantphysiol.org/content/162/4/1802.long Plant Physiology. POUND, M.P., FRENCH, A.P., ATKINSON, J.A., WELLS, D.M., BENNETT, M.J. and PRIDMORE, T., 2013. RootNav: navigating images of complex root architectures Plant Physiology. 162(4), 1802-1814 PERET, BENJAMIN, MIDDLETON, ALISTAIR M., FRENCH, ANDREW P., LARRIEU, ANTOINE, BISHOPP, ANTHONY, NJO, MARIA, WELLS, DARREN M., PORCO, SILVANA, MELLOR, NATHAN, BAND, LEAH R., CASIMIRO, ILDA, KLEINE-VEHN, JUERGEN, VANNESTE, STEFFEN, SAIRANEN, ILKKA, MALLET, ROMAIN, SANDBERG, GORAN, LJUNG, KARIN, BEECKMAN, TOM, BENKOVA, EVA, FRIML, JIRI, KRAMER, ERIC, KING, JOHN R., DE SMET, IVE, PRIDMORE, TONY, OWEN, MARKUS and BENNETT, MALCOLM J., 2013. Sequential induction of auxin efflux and influx carriers regulates lateral root emergence MOLECULAR SYSTEMS BIOLOGY. 9, PÉRET B, MIDDLETON AM, FRENCH AP, LARRIEU A, BISHOPP A, NJO M, WELLS DM, PORCO S, MELLOR N, BAND LR, CASIMIRO I, KLEINE-VEHN J, VANNESTE S, SAIRANEN I, MALLET R, SANDBERG G, LJUNG K, BEECKMAN T, BENKOVA E, FRIML J, KRAMER E, KING JR, DE SMET I, PRIDMORE T, OWEN M and BENNETT MJ, 2013. Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Molecular systems biology. 9, 699 BAND. L.R., WELLS, D.M., LARRIEU, A., SUN, J., MIDDLETON, A.M., FRENCH, A.P., BRUNOUD, G., SATO, E.M., WILSON, M.H., PÉRET, B., OLIVA, M., SWARUP, R., SAIRANEN, I., PARRY, G., LJUNG, K., BEECKMAN, T., GARIBALDI, J.M., ESTELLE, M., OWEN, M.R., VISSENBERG, K., HODGMAN, T.C., PRIDMORE, T.P., KING, J.R., VERNOUX, T. and BENNETT, M.J., 2012. Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism Proceedings of the National Academy of Sciences of the United States of America. 109(12), 4668-4673 FRENCH AP, WILSON MH, KENOBI K, DIETRICH D, VOß U, UBEDA-TOMÁS S, PRIDMORE TP and WELLS DM, 2012. Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape. Plant methods. 8, 7 WELLS, D.M., FRENCH, A.P., NAEEM, A., ISHAQ, O., TRAINI, R., HIJAZI, H., BENNETT, M.J. and PRIDMORE, T.P., 2012. Recovering the dynamics of root growth and development using novel image acquisition and analysis methods Philosophical Transactions of the Royal Society B: Biological Sciences. 367(1595), 1517-1524 SETHURAMAN, V., FRENCH, A., WELLS, D., KENOBI, K. and PRIDMORE, T., 2012. Tissue-level segmentation and tracking of cells in growing plant roots Machine Vision and Applications. 23(4), 639-658 TONY P. PRIDMORE, ANDREW P. FRENCH and MICHAEL P. POUND, 2012. What lies beneath: underlying assumptions in bioimage analysis Trends in Plant Science. 17(12), 688-692 POUND, M.P., FRENCH, A.P., WELLS, D.M., BENNETT, M.J. and PRIDMORE, T.P., 2012. CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images Plant Cell. 24(4), 1353-1361 FRENCH AP, WELLS DM, EVERITT N and PRIDMORE TP, 2012. High-Throughput Quantification of Root Growth. In: MANCUSO, S, ed., Measuring Roots: An Updated Approach Heidelberg. xiii, 382 p.
NAEEM, A., FRENCH, A.P., WELLS, D.M. and PRIDMORE, T.P., 2011. High-throughput feature counting and measurement of roots Bioinformatics. 27(9), 1337-1338 HODGMAN, TC, FRENCH, A and WESTHEAD, DR, 2010. Instant Notes in Bioinformatics 2nd ed.. Abingdon.
SETHURAMAN VS, TAYLOR S, PRIDMORE TP, FRENCH AP and WELLS DM, 2009. Segmentation and Tracking of Confocal Images of Arabidopsis thaliana Root Cells using Automatically-Initialized Network Snakes In: 3rd International Conference on Bioinformatics and Biomedical Engineering, Beijing, China.
WRIGHT, EF, WELLS, DM, FRENCH, AP, HOWELLS, C and EVERITT, NM, 2009. A Low-Cost Automated Focusing System For Time-Lapse Microscopy Measurement Science & Technology. 20(2), 027003 FRENCH, A., UBEDA-TOMÁS, S., HOLMAN, T.J., BENNETT, M.J. and PRIDMORE, T., 2009. High throughput quantification of root growth using a novel image analysis tool Plant Physiology. 150(4), 1784-1795 FRENCH AP, BENNETT MJ, HOWELLS C, PATEL D and PRIDMORE TP, 2008. Probablilistic Tracking Approach to Root measurement in Images In: Biosignals 2008 - International Conference on Bio-inspired Systems and Signal Processing - Madeira, Portugal.
FRENCH, A.P., MILLS, S., SWARUP, R., BENNETT, M.J. and PRIDMORE, T.P., 2008. Colocalization of fluorescent markers in confocal microscope images of plant cells Nature Protocols. 3(4), 619-628 POUND M, NAEEM A, FRENCH A and PRIDMORE T, 2007. Quantitative and Qualitative Evaluation of Visual Tracking Algorithms using Statistical Tests In: 10th IEEE International Workshop on Performance Evaluation of Tracking and Surveillance.
WALKER, B., SCHNÄDELBACH, H., RENNICK EGGLESTONE, S., CLARK, A., ORBACH, T., WRIGHT, M., NG, K., FRENCH, A., RODDEN, T. and BENFORD, S., 2007. Augmenting amusement rides with telemetry In: Advances in Computer Entertainment Technology. 115-122
GREENHALGH, C., FRENCH, A., TENNENT, P., HUMBLE, J. and CRABTREE, A., 2007. From ReplayTool to Digital Replay System In: Online Proceedings of the 3rd International Conference on e-Social Science, October 7-9, Ann Arbor, Michigan: ESRC/NSF.. (In Press.)
FRENCH, A., GREENHALGH, C., CRABTREE, A., WRIGHT, M., BRUNDELL, P., HAMPSHIRE, A. and RODDEN, T., 2006. Software Replay Tools for Time-Based Social Science Data In: Second International Conference on e-Social Science.
CRABTREE, A., FRENCH, A., GREENHALGH, C., BENFORD, S., CHEVERST, K., FITTON, D., ROUNCEFIELD, M. and GRAHAM, C., 2006. Developing digital records: early experiences of record and replay Computer Supported Cooperative Work. 15(4), 281-319 CRABTREE, A, GREENHALGH, C, FRENCH, A, RODDEN, T and BENFORD, S., 2006. Exploiting digital records: new resources and tools for qualitative research in contemporary social science In: Words Instead of Numbers: The Status of Software in the Qualitative Research World.
CRABTREE, A, FRENCH, A, GREENHALGH, C and RODDEN, T. BENFORD, S., 2006. Working with digital records: developing tool support In: The 2nd International Conference on e-Social Science.
FROST,A., FRENCH,A., TILLETT,R., PRIDMORE,T.P. and WELCH,T.R., 2004. A vision guided robot for tracking a live, loosely constrained pig Computers and Electronics in Agriculture,. 44(2), 93-106 FRENCH, A., PRIDMORE, T.P., TILLETT, R. and FROST, A., 2003. An Image Analysis System to Guide a Sensor Placement Robot onto a Feeding Pig In: Proceedings of the Irish Machine Vision Conference.