BREITWIESER, LUKAS, HESAM, AHMAD, DE MONTIGNY, JEAN, VAVOURAKIS, VASILEIOS, IOSIF, ALEXANDROS, JENNINGS, JACK, KAISER, MARCUS, MANCA, MARCO, DI MEGLIO, ALBERTO, AL-ARS, ZAID and OTHERS, 2022. BioDynaMo: a modular platform for high-performance agent-based simulation Bioinformatics. 38(2), 453-460
MEHRARAM, RAMTIN, PERAZA, LUIS R, MURPHY, NICHOLAS RE, CROMARTY, RUTH A, GRAZIADIO, SARA, O’BRIEN, JOHN T, KILLEN, ALISON, COLLOBY, SEAN J, FIRBANK, MICHAEL, SU, LI and OTHERS, 2022. Functional and structural brain network correlates of visual hallucinations in Lewy body dementia Brain. 145(6), 2190-2205
HUO, SIYU, ZOU, YONG, KAISER, MARCUS and LIU, ZONGHUA, 2022. Time-limited self-sustaining rhythms and state transitions in brain networks Physical Review Research. 4(2), 023076
LAI, YIJIE, HE, NAYING, WEI, HONGJIANG, DENG, LIFU, ZHOU, HAIYAN, LI, JUN, KAISER, MARCUS, ZHANG, CHENCHENG, LI, DIANYOU and SUN, BOMIN, 2022. Value of functional connectivity in outcome prediction for pallidal stimulation in Parkinson disease Journal of Neurosurgery. 1(aop), 1-11
HUTCHINGS, FRANCES, THORNTON, CHRISTOPHER, ZHANG, CHENCHENG, WANG, YUJIANG and KAISER, MARCUS, 2021. Predicting the impact of electric field stimulation in a detailed computational model of cortical tissue: Journal of Neural Engineering Journal of Neural Engineering. in press LEE, SUJI, KIM, DAEGYEOM, YOUN, HYUNCHUL, HYUNG, WON SEOK WILLIAM, SUH, SANGIL, KAISER, MARCUS, HAN, CHEOL E. and JEONG, HYUN-GHANG, 2021. Brain network analysis reveals that amyloidopathy affects comorbid cognitive dysfunction in older adults with depression: Scientific Reports Scientific reports. 11(1), 4299 BAUER, ROMAN, CLOWRY, GAVIN J and KAISER, MARCUS, 2021. Creative destruction: a basic computational model of cortical layer formation Cerebral Cortex. 31(7), 3237-3253
CHEN, XUE, WANG, YANJIANG, KOPETZKY, SEBASTIAN J, BUTZ-OSTENDORF, MARKUS and KAISER, MARCUS, 2021. Connectivity within regions characterizes epilepsy duration and treatment outcome Human brain mapping. 42(12), 3777-3791
ORTIZ-RIOS, MICHAEL, BALEZEAU, FABIEN, HAAG, MARCUS, SCHMID, MICHAEL C and KAISER, MARCUS, 2021. Dynamic reconfiguration of macaque brain networks during free-viewing of natural scenes bioRxiv.
YIN, DAZHI and KAISER, MARCUS, 2021. Understanding neural flexibility from a multifaceted definition NeuroImage. 235, 118027
CHEN, XUE, NECUS, JOE, PERAZA, LUIS R, MEHRARAM, RAMTIN, WANG, YANJIANG, O’BRIEN, JOHN T, BLAMIRE, ANDREW, KAISER, MARCUS and TAYLOR, JOHN-PAUL, 2021. The functional brain favours segregated modular connectivity at old age unless affected by neurodegeneration Communications Biology. 4(1), 1-16
FIRFILIONIS, DIMITRIOS, HUTCHINGS, FRANCES, TAMADONI, REZA, WALSH, DARREN, TURNBULL, MARK, ESCOBEDO-COUSIN, ENRIQUE, BAILEY, RICHARD G, GAUSDEN, JOHANNES, PATEL, AALIYAH, HACI, DORIAN and OTHERS, 2021. A Closed-Loop Optogenetic Platform Frontiers in neuroscience. 1153
ORTIZ-RIOS, MICHAEL, BALEZEAU, FABIEN, HAAG, MARCUS, SCHMID, MICHAEL C and KAISER, MARCUS, 2021. Dynamic reconfiguration of macaque brain networks during natural vision NeuroImage. 244, 118615
HALL, GERARD R, KAISER, MARCUS and FARR, TRACY D, 2021. Functional Connectivity Change in Response to Stroke Is Comparable Across Species: From Mouse to Man
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CARMON, J., HEEGE, J., NECUS, J. H., OWEN, T. W., PIPA, G., KAISER, M., TAYLOR, P. N. and WANG, Y., 2020. Reliability and comparability of human brain structural covariance networks: Neuroimage Neuroimage. 220, 117104 GIANNAKAKIS, EMMANOUIL, HAN, CHEOL E., WEBER, BERND, HUTCHINGS, FRANCES and KAISER, MARCUS, 2020. Towards simulations of long-term behavior of neural networks: Modeling synaptic plasticity of connections within and between human brain regions: Neurocomputing Neurocomputing. 416, 38-44 JIANG, S., KAISER, M., YANG, S., KOLLIAS, S. and KRASNOGOR, N., 2020. A Scalable Test Suite for Continuous Dynamic Multiobjective Optimization: IEEE Trans Cybern 50(6), 2814-2826 JIANG, SHOUYONG, LI, HONGRU, GUO, JINGLEI, ZHONG, MINGJUN, YANG, SHENGXIANG, KAISER, MARCUS and KRASNOGOR, NATALIO, 2020. AREA: An adaptive reference-set based evolutionary algorithm for multiobjective optimisation: Information Sciences Information Sciences. 515, 365-387 JIANG, S., WANG, Y., KAISER, M. and KRASNOGOR, N., 2020. NIHBA: a network interdiction approach for metabolic engineering design: Bioinformatics Bioinformatics. 36(11), 3482-3492 GIANNAKAKIS, E., HUTCHINGS, F., PAPASAVVAS, C. A., HAN, C. E., WEBER, B., ZHANG, C. and KAISER, M., 2020. Computational modelling of the long-term effects of brain stimulation on the local and global structural connectivity of epileptic patients: PLoS One PLOS ONE. 15(2), e0221380 KAISER, MARCUS, 2020. Functional compensation after lesions: Predicting site and extent of recovery: arXiv preprint arXiv:2005.03093 arXiv preprint arXiv:2005.03093.
KAISER, MARCUS, TOMSETT, RICHARD, HUTCHINGS, FRANCES and THORNTON, CHRISTOPHER, 2020. Vertex: Scholarpedia Scholarpedia. 15(6), 53365 PERAZA, L. R., DIAZ-PARRA, A., KENNION, O., MORATAL, D., TAYLOR, J. P., KAISER, M. and BAUER, R., 2019. Structural connectivity centrality changes mark the path toward Alzheimer's disease: Alzheimers Dement (Amst) 11, 98-107 SCHUMACHER, J., CROMARTY, R., GALLAGHER, P., FIRBANK, M. J., THOMAS, A. J., KAISER, M., BLAMIRE, A. M., O'BRIEN, J. T., PERAZA, L. R. and TAYLOR, J. P., 2019. Structural correlates of attention dysfunction in Lewy body dementia and Alzheimer's disease: an ex-Gaussian analysis: J Neurol 266(7), 1716-1726 SCHUMACHER, JULIA, PERAZA, LUIS R., FIRBANK, MICHAEL, THOMAS, ALAN J., KAISER, MARCUS, GALLAGHER, PETER, O’BRIEN, JOHN T., BLAMIRE, ANDREW M. and TAYLOR, JOHN-PAUL, 2019. Dysfunctional brain dynamics and their origin in Lewy body dementia: Brain Brain. 142(6), 1767–1782
SINHA, N., WANG, Y., DAUWELS, J., KAISER, M., THESEN, T., FORSYTH, R. and TAYLOR, P. N., 2019. Computer modelling of connectivity change suggests epileptogenesis mechanisms in idiopathic generalised epilepsy: Neuroimage Clin Neuroimage Clin. 21, 101655 SCHUMACHER, J., PERAZA, L. R., FIRBANK, M., THOMAS, A. J., KAISER, M., GALLAGHER, P., O'BRIEN, J. T., BLAMIRE, A. M. and TAYLOR, J. P., 2019. Dynamic functional connectivity changes in dementia with Lewy bodies and Alzheimer's disease: Neuroimage Clin Neuroimage Clin. 22, 101812 CROMARTY, R. A., SCHUMACHER, J., GRAZIADIO, S., GALLAGHER, P., KILLEN, A., FIRBANK, M. J., BLAMIRE, A., KAISER, M., THOMAS, A. J., O'BRIEN, J. T., PERAZA, L. R. and TAYLOR, J. P., 2018. Structural Brain Correlates of Attention Dysfunction in Lewy Body Dementias and Alzheimer's Disease: Front Aging Neurosci Front Aging Neurosci. 10, 347 GONZALEZ-DE-ALEDO, PABLO, VLADIMIROV, ANDREY, MANCA, MARCO, BAUGH, JERRY, ASAI, RYO, KAISER, MARCUS and BAUER, ROMAN, 2018. An optimization approach for agent-based computational models of biological development: Advances in Engineering Software Advances in Engineering Software. 121, 262-275 SCHUMACHER, J., PERAZA, L. R., FIRBANK, M., THOMAS, A. J., KAISER, M., GALLAGHER, P., O'BRIEN, J. T., BLAMIRE, A. M. and TAYLOR, J. P., 2018. Functional connectivity in dementia with Lewy bodies: A within- and between-network analysis: Hum Brain Mapp Hum Brain Mapp. 39(3), 1118-1129 TORRES, MARINA, JIANG, SHOUYONG, PELTA, DAVID, KAISER, MARCUS and KRASNOGOR, NATALIO, 2018. Strain Design as Multiobjective Network Interdiction Problem: A Preliminary Approach At: Cham
BAUER, ROMAN, BREITWIESER, LUKAS, DI MEGLIO, ALBERTO, JOHARD, LEONARD, KAISER, MARCUS, MANCA, MARCO, MAZZARA, MANUEL, RADEMAKERS, FONS, TALANOV, MAX and TCHITCHIGIN, ALEXANDER DMITRIEVICH, 2017. The BioDynaMo Project. In: JORDI, VALLVERDÚ, MANUEL, MAZZARA, MAX, TALANOV, SALVATORE, DISTEFANO and ROBERT, LOWE, eds., Advanced Research on Biologically Inspired Cognitive Architectures IGI Global. 117-125 PERAZA, L. R., NESBITT, D., LAWSON, R. A., DUNCAN, G. W., YARNALL, A. J., KHOO, T. K., KAISER, M., FIRBANK, M. J., O'BRIEN, J. T., BARKER, R. A., BROOKS, D. J., BURN, D. J. and TAYLOR, J. P., 2017. Intra- and inter-network functional alterations in Parkinson's disease with mild cognitive impairment: Hum Brain Mapp Hum Brain Mapp. 38(3), 1702-1715 SINHA, N., DAUWELS, J., KAISER, M., CASH, S. S., BRANDON WESTOVER, M., WANG, Y. and TAYLOR, P. N., 2017. Predicting neurosurgical outcomes in focal epilepsy patients using computational modelling: Brain Brain. 140(2), 319-332 SINHA, N., DAUWELS, J., KAISER, M., CASH, S. S., WESTOVER, M. B., WANG, Y. and TAYLOR, P. N., 2017. Reply: Computer models to inform epilepsy surgery strategies: prediction of postoperative outcome: Brain Brain. 140(5), e31 WANG, Y., TREVELYAN, A. J., VALENTIN, A., ALARCON, G., TAYLOR, P. N. and KAISER, M., 2017. Mechanisms underlying different onset patterns of focal seizures: PLoS Comput Biol PLoS Comput Biol. 13(5), e1005475 AINSWORTH, M., LEE, S., KAISER, M., SIMONOTTO, J., KOPELL, N. J. and WHITTINGTON, M. A., 2016. GABAB receptor-mediated, layer-specific synaptic plasticity reorganizes gamma-frequency neocortical response to stimulation: Proc Natl Acad Sci U S A Proc Natl Acad Sci U S A. 113(19), E2721-9 EDWIN THANARAJAH, S., HAN, C. E., ROTARSKA-JAGIELA, A., SINGER, W., DEICHMANN, R., MAURER, K., KAISER, M. and UHLHAAS, P. J., 2016. Abnormal Connectional Fingerprint in Schizophrenia: A Novel Network Analysis of Diffusion Tensor Imaging Data: Front Psychiatry Front Psychiatry. 7, 114 PERAZA, L. R., COLLOBY, S. J., DEBOYS, L., O'BRIEN, J. T., KAISER, M. and TAYLOR, J. P., 2016. Regional functional synchronizations in dementia with Lewy bodies and Alzheimer's disease: Int Psychogeriatr 28(7), 1143-51 WANG, Y., NECUS, J., KAISER, M. and MOTA, B., 2016. Universality in human cortical folding in health and disease: Proc Natl Acad Sci U S A Proc Natl Acad Sci U S A. 113(45), 12820-12825 YI-PING LO, REUBEN D O'DEA, JONATHAN J CROFTS, CHEOL E HAN and MARCUS KAISER, 2015. A geometric network model of intrinsic grey-matter connectivity of the human brain Scientific Reports. 5, HUTCHINGS, F., HAN, C. E., KELLER, S. S., WEBER, B., TAYLOR, P. N. and KAISER, M., 2015. Predicting Surgery Targets in Temporal Lobe Epilepsy through Structural Connectome Based Simulations: PLoS Comput Biol PLoS Comput Biol. 11(12), e1004642 LO, Y. P., O'DEA, R., CROFTS, J. J., HAN, C. E. and KAISER, M., 2015. A geometric network model of intrinsic grey-matter connectivity of the human brain: Sci Rep Sci Rep. 5, 15397 PERAZA, L. R., COLLOBY, S. J., FIRBANK, M. J., GREASY, G. S., MCKEITH, I. G., KAISER, M., O'BRIEN, J. and TAYLOR, J. P., 2015. Resting state in Parkinson's disease dementia and dementia with Lewy bodies: commonalities and differences: Int J Geriatr Psychiatry Int J Geriatr Psychiatry. 30(11), 1135-46 TAYLOR, P. N., HAN, C. E., SCHOENE-BAKE, J. C., WEBER, B. and KAISER, M., 2015. Structural connectivity changes in temporal lobe epilepsy: Spatial features contribute more than topological measures: Neuroimage Clin Neuroimage Clin. 8(0), 322-8 TAYLOR, P. N., THOMAS, J., SINHA, N., DAUWELS, J., KAISER, M., THESEN, T. and RUTHS, J., 2015. Optimal control based seizure abatement using patient derived connectivity: Front Neurosci Front Neurosci. 9, 202 TOMSETT, R. J., AINSWORTH, M., THIELE, A., SANAYEI, M., CHEN, X., GIESELMANN, M. A., WHITTINGTON, M. A., CUNNINGHAM, M. O. and KAISER, M., 2015. Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): comparing multi-electrode recordings from simulated and biological mammalian cortical tissue: Brain Struct Funct Brain Struct Funct. 220(4), 2333-53 YOO, S. W., HAN, C. E., SHIN, J. S., SEO, S. W., NA, D. L., KAISER, M., JEONG, Y. and SEONG, J. K., 2015. Corrigendum: A Network Flow-based Analysis of Cognitive Reserve in Normal Ageing and Alzheimer's Disease: Sci Rep Sci Rep. 5, 12125 KAISER, MARCUS, 2014. Neuropathologies and Networks. In: JAEGER, DIETER and JUNG, RANU, eds., Encyclopedia of Computational Neuroscience Springer New York. 1-6 KAISER, MARCUS and HILGETAG, CLAUS C., 2014. Wiring Principles, Optimization. In: JAEGER, DIETER and JUNG, RANU, eds., Encyclopedia of Computational Neuroscience Springer New York. 1-7 KLEIN, D., ROTARSKA-JAGIELA, A., GENC, E., SRITHARAN, S., MOHR, H., ROUX, F., HAN, C. E., KAISER, M., SINGER, W. and UHLHAAS, P. J., 2014. Adolescent brain maturation and cortical folding: evidence for reductions in gyrification: PLoS One PLOS ONE. 9(1), e84914 PERAZA, L. R., KAISER, M., FIRBANK, M., GRAZIADIO, S., BONANNI, L., ONOFRJ, M., COLLOBY, S. J., BLAMIRE, A., O'BRIEN, J. and TAYLOR, J. P., 2014. fMRI resting state networks and their association with cognitive fluctuations in dementia with Lewy bodies: Neuroimage Clin Neuroimage Clin. 4, 558-65 TOMSETT, RICHARD J., AINSWORTH, MATT, THIELE, ALEXANDER, SANAYEI, MEHDI, CHEN, XING, GIESELMANN, ALWIN, WHITTINGTON, MILES A., CUNNINGHAM, MARK O. and KAISER, MARCUS, 2014. Modelling spatially realistic local field potentials in spiking neural networks using the VERTEX simulation tool: BMC Neuroscience BMC Neuroscience. 15(Suppl 1), P130
O'DEA R, CROFTS JJ and KAISER M, 2013. Spreading dynamics on spatially constrained complex brain networks. Journal of the Royal Society, Interface / the Royal Society. 10(81), 20130016 BOHR, I. J., KENNY, E., BLAMIRE, A., O'BRIEN, J. T., THOMAS, A. J., RICHARDSON, J. and KAISER, M., 2012. Resting-state functional connectivity in late-life depression: higher global connectivity and more long distance connections: Front Psychiatry Front Psychiatry. 3, 116 COMIN, CESAR H., BATISTA, JOÃO L. B., VIANA, MATHEUS P., COSTA, LUCIANO DA F., TRAVENÇOLO, BRUNO A. N. and KAISER, MARCUS, 2012. Structure and Dynamics: The Transition from Nonequilibrium to Equilibrium in Integrate-and-Fire Dynamics: International Journal of Bifurcation and Chaos International Journal of Bifurcation and Chaos. 22(07), 1250174 ZAWADZKI, K., ECHTERMEYER, C., VIANA, M.P., KAISER, M. and COSTA, L.D.F., 2012. Morphological Homogeneity of Neurons: Searching for outliers in inner categories of neuronal cells: Neuroinformatics Neuroinformatics. (in press)
ECHTERMEYER, CHRISTOPH, COSTA, LUCIANO DA F., RODRIGUES, FRANCISCO A. and KAISER, MARCUS, 2011. Automatic Network Fingerprinting Through Singular Node Motifs: PLoS ONE PLOS ONE. 6(1), e15765 ECHTERMEYER, C., HAN, C. E., ROTARSKA-JAGIELA, A., MOHR, H., UHLHAAS, P. J. and KAISER, M., 2011. Integrating temporal and spatial scales: human structural network motifs across age and region of interest size: Front Neuroinform Front Neuroinform. 5, 10 KAISER, M., HILGETAG, C. C. and KOTTER, R., 2010. Hierarchy and dynamics of neural networks: Front Neuroinform Front Neuroinform. 4, 112 GIBSON, FRANK, OVERTON, PAUL G, SMULDERS, TOM V, SCHULTZ, SIMON R, EGLEN, STEPHEN J, INGRAM, COLIN D, PANZERI, STEFANO, BREAM, PHIL, WHITTINGTON, MILES, SERNAGOR, EVELYNE, CUNNINGHAM, MARK O., ADAMS, CHRISTOPHER, ECHTERMEYER, CHRISTOPH, SIMONOTTO, JENNIFER, KAISER, MARCUS, SWAN, DANIEL C, FLETCHER, MARTYN and LORD, PHILLIP, 2009. Minimum Information about a Neuroscience Investigation (MINI): Electrophysiology: Nature Precedings Nature Precedings. 1720.2
RIBEIRO, P., SIMONOTTO, J., KAISER, M. and SILVA, F., 2009. Parallel calculation of multi-electrode array correlation networks: J Neurosci Methods J Neurosci Methods. 184(2), 357-64 KAISER, MARCUS, 2008. Multiple-scale hierarchical connectivity of cortical networks limits the spread of activity
ROOPUN, ANITA K., KRAMER, MARK A., CARRACEDO, LUCY M., KAISER, MARCUS, DAVIES, CERI H., TRAUB, ROGER D., KOPELL, NANCY J. and WHITTINGTON, MILES A., 2008. Temporal interactions between cortical rhythms: Frontiers in Neuroscience Frontiers in Neuroscience. 2(2), 145-154
ROOPUN, A. K., KRAMER, M. A., CARRACEDO, L. M., KAISER, M., DAVIES, C. H., TRAUB, R. D., KOPELL, N. J. and WHITTINGTON, M. A., 2008. Period concatenation underlies interactions between gamma and beta rhythms in neocortex: Front Cell Neurosci 2, 1 KAISER, MARCUS, GÖRNER, MATTHIAS and HILGETAG, C. C., 2007. Functional Criticality in Clustered Networks without inhibition: New Journal of Physics New Journal of Physics. 9, 110
SMITH, L.S., AUSTIN, J., BAKER, S., BORISYUK, R., EGLEN, S., FENG, J., GURNEY, K., JACKSON, T., KAISER, M., OVERTON, P., PANZERI, S., QUIROGA, R. QUIAN, SCHULTZ, S.R., SERNAGOR, E., SMITH, V.A., SMULDERS, T.V., STUART, L., WHITTINGTON, M. and INGRAM, C., 2007. The CARMEN e-Science pilot project: Neuroinformatics work packages: Proceedings of the UK e-Science All Hands Meeting In:
LAPPE, M., KUHLMANN, S., OERKE, B. and KAISER, M., 2006. The fate of object features during perisaccadic mislocalization: J Vis 6(11), 1282-93 CLAUS C. HILGETAG and MARCUS KAISER, 2005. Die Netzwerk-Struktur Biologischer Systeme: BIOforum 32-33
KAISER, MARCUS, 2005. Spatial Network Growth: Generating Small-World, Scale-Free, and Multi-Cluster Spatial Networks (1)
HILGETAG, C. C. and KAISER, M., 2004. Clustered organization of cortical connectivity: Neuroinformatics Neuroinformatics. 2(3), 353-60 KAISER, M. and HILGETAG, C. C., 2004. Spatial growth of real-world networks: Phys Rev E Stat Nonlin Soft Matter Phys Phys Rev E Stat Nonlin Soft Matter Phys. 69(3 Pt 2), 036103 KAISER, M. and HILGETAG, C. C., 2004. Modelling the development of cortical systems networks: Neurocomputing Neurocomputing. 58-60, 297-302
KAISER, M. and HILGETAG, C. C., 2004. Edge vulnerability in neural and metabolic networks: Biol Cybern Biol Cybern. 90(5), 311-7 SPORNS, O., CHIALVO, D. R., KAISER, M. and HILGETAG, C. C., 2004. Organization, development and function of complex brain networks: Trends Cogn Sci Trends Cogn Sci. 8(9), 418-25 KAISER, MARCUS, 2002. Computersimulation der visuellen Lokalisation während sakkadischer Augenbewegung
MARTIN, ROBERT, KAISER, MARCUS, ANDRAS, PETER and YOUNG, MALCOLM P., 2001. Is the Brain a Scale-Free Network? At: San Diego, US