PEARCE, S. P., KING, J. R., STEINBRECHER, T., LEUBNER-METZGER, G., EVERITT, N. M. and HOLDSWORTH, M. J., 2018. Finite indentation of highly curved elastic shells PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES. 474(2209), TOMANOV K, NUKARINEN E, VICENTE J, MENDIONDO GM, WINTER N, NEHLIN L, WECKWERTH W, HOLDSWORTH MJ, TEIGE M and BACHMAIR A, 2018. Sumoylation and phosphorylation: hidden and overt links. Journal of experimental botany. (In Press.)
SASIDHARAN R, BAILEY-SERRES J, ASHIKARI M, ATWELL BJ, COLMER TD, FAGERSTEDT K, FUKAO T, GEIGENBERGER P, HEBELSTRUP KH, HILL RD, HOLDSWORTH MJ, ISMAIL AM, LICAUSI F, MUSTROPH A, NAKAZONO M, PEDERSEN O, PERATA P, SAUTER M, SHIH MC, SORRELL BK, STRIKER GG, VAN DONGEN JT, WHELAN J, XIAO S, VISSER EJW and VOESENEK LACJ, 2017. Community recommendations on terminology and procedures used in flooding and low oxygen stress research. New Phytologist. 214(4), 1403-1407 VICENTE J, MENDIONDO GM, MOVAHEDI M, PEIRATS-LLOBET M, JUAN YT, SHEN YY, DAMBIRE C, SMART K, RODRIGUEZ PL, CHARNG YY, GRAY JE and HOLDSWORTH MJ, 2017. The Cys-Arg/N-End Rule Pathway Is a General Sensor of Abiotic Stress in Flowering Plants. Current Biology. 27, 3183-3190 HOLDSWORTH MJ, 2017. First hints of new sensors. Nature Plants. 3(10), 767-768 DISSMEYER N, GRACIET E, HOLDSWORTH MJ and GIBBS DJ, 2017. N-term 2017: Proteostasis via the N-terminus. Trends in biochemical sciences. (In Press.)
ZHANG H, GANNON L, HASSALL KL, DEERY MJ, GIBBS DJ, HOLDSWORTH MJ, VAN DER HOORN RAL, LILLEY KS and THEODOULOU FL, 2017. N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway. The New phytologist. (In Press.)
MENDIONDO GM, GIBBS DJ, SZURMAN-ZUBRZYCKA M, KORN A, MARQUEZ J, SZAREJKO I, MALUSZYNSKI M, KING J, AXCELL B, SMART K, CORBINEAU F and HOLDSWORTH MJ, 2016. Enhanced waterlogging tolerance in barley by manipulation of expression of the N-end rule pathway E3 ligase PROTEOLYSIS6. Plant Biotechnology Journal. 40(1), 40-50 GRAVOT A, RICHARD G, LIME T, LEMARIÉ S, JUBAULT M, LARIAGON C, LEMOINE J, VICENTE J, ROBERT-SEILANIANTZ A, HOLDSWORTH MJ and MANZANARES-DAULEUX MJ, 2016. Hypoxia response in Arabidopsis roots infected by Plasmodiophora brassicae supports the development of clubroot. BMC plant biology. 16(1), 251 SHORINOLA O, BIRD N, SIMMONDS J, BERRY S, HENRIKSSON T, JACK P, WERNER P, GERJETS T, SCHOLEFIELD D, BALCÁRKOVÁ B, VALÁRIK M, HOLDSWORTH MJ, FLINTHAM J and UAUY C, 2016. The wheat Phs-A1 pre-harvest sprouting resistance locus delays the rate of seed dormancy loss and maps 0.3 cM distal to the PM19 genes in UK germplasm. Journal of experimental botany. 67(14), 4169-78 WILSON, MICHAEL H, HOLMAN, TARA J, SORENSEN, IBEN, CANCHO-SANCHEZ, ESTER, WELLS, DARREN M, SWARUP, RANJAN, KNOX, J PAUL, WILLATS, WILLIAM G T, UBEDA-TOMAS, SUSANA, HOLDSWORTH, MICHAEL, BENNETT, MALCOLM J, VISSENBERG, KRIS and HODGMAN, T CHARLIE, 2015. Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone. Frontiers in cell and developmental biology. 3, 10
SCHELER C, WEITBRECHT K, PEARCE SP, HAMPSTEAD A, BÜTTNER-MAINIK A, LEE KJD, VOEGELE A, ORACZ K, DEKKERS BJW, WANG X, WOOD ATA, BENTSINK L, KING JR, KNOX JP, HOLDSWORTH MJ, MÜLLER K and LEUBNER-METZGER G, 2015. Promotion of testa rupture during garden cress germination involves seed compartment-specific expression and activity of pectin methylesterases. Plant Physiology. 167(1), 200-215 ABBAS M, BERCKHAN S, ROONEY DJ, GIBBS DJ, VICENTE CONDE J, SOUSA CORREIA C, BASSEL GW, MARÍN-DE LA ROSA N, LEÓN J, ALABADÍ D, BLÁZQUEZ MA and HOLDSWORTH MJ, 2015. Oxygen sensing coordinates photomorphogenesis to facilitate seedling survival. Current Biology. 25(11), 1483-8 GIBBS DJ, MD ISA N, MOVAHEDI M, LOZANO-JUSTE J, MENDIONDO GM, BERCKHAN S, MARÍN-DE LA ROSA N, VICENTE CONDE J, SOUSA CORREIA C, PEARCE SP, BASSEL GW, HAMALI B, TALLOJI P, TOMÉ DFA, COEGO A, BEYNON J, ALABADÍ D, BACHMAIR A, LEÓN J, GRAY JE, THEODOULOU FL and HOLDSWORTH MJ, 2014. Nitric Oxide Sensing in Plants Is Mediated by Proteolytic Control of Group VII ERF Transcription Factors. Molecular Cell. 53(3), 369-379 MARIN-DE LA ROSA N, SOTILLO B, MISKOLCZI P, GIBBS DJ, VICENTE J, CARBONERO P, ONATE-SANCHEZ L, HOLDSWORTH MJ, BHALERAO R, ALABADI D and BLAZQUEZ MA, 2014. Large-scale identification of gibberellin-related transcription factors defines Group VII ERFs as functional DELLA partners. Plant Physiology. 166, 1022-1032 MENDIONDO GM, MEDHURST A, VAN ROERMUND CW, ZHANG X, DEVONSHIRE J, SCHOLEFIELD D, FERNÁNDEZ J, AXCELL B, RAMSAY L, WATERHAM HR, WAUGH R, THEODOULOU FL and HOLDSWORTH MJ, 2014. Barley has two peroxisomal ABC transporters with multiple functions in β-oxidation. Journal of Experimental Botany. 65(17), 4833-4847 BASSEL GW, STAMM P, MOSCA G, BARBIER DE REUILLE P, GIBBS DJ, WINTER R, JANKA A, HOLDSWORTH MJ and SMITH RS, 2014. Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo. Proceedings of the National Academy of Sciences of the United States of America. 111(23), 8685-90 GIBBS DJ, BACARDIT J, BACHMAIR A and HOLDSWORTH MJ, 2014. The eukaryotic N-end rule pathway: conserved mechanisms and diverse functions. Trends in Cell Biology. 24, 603–611 DEKKERS B.J.W., PEARCE S., VAN BOLDEREN-VELDKAMP R.P., MARSHALL A., WIDERA P., GILBERT J., DROST H., BASSEL G.W., MÜLLER K., KING J.R., WOOD A.T.A., GROSSE I., QUINT M., KRASNOGOR N., LEUBNER-METZGER G., HOLDSWORTH M.J. and BENTSINK L., 2013. Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant physiology. 163(1), 205-15 BAILEY-SERRES J., FUKAO T., GIBBS D.J., HOLDSWORTH M.J., LEE S.C., LICAUSI F., PERATA P., VOESENEK L.A.C.J. and VAN DONGEN J.T., 2012. Making Sense Of Low Oxygen Sensing. Trends In Plant Science. 17, 129-138 MIDDLETON A.M., UBEDA-TOMÁS S., GRIFFITHS J., HOLMAN T., HEDDEN P., THOMAS S.G., PHILLIPS A.L., HOLDSWORTH M.J., BENNETT M.J., KING J.R. and OWEN M.R., 2012. Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling Proceedings of the National Academy of Sciences of the United States of America. 109(19), 7571-7576 GONZALEZ-GUZMAN M, PIZZIO GA, ANTONI R, VERA-SIRERA F, MERILO E, BASSEL GW, FERNÁNDEZ MA, HOLDSWORTH MJ, PEREZ-AMADOR MA, KOLLIST H and RODRIGUEZ PL, 2012. Arabidopsis pyr/pyl/rcar receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid. The Plant Cell. 24(6), 2483-96 LUCAS, M., SWARUP, R., PAPONOV, I.A., SWARUP, K., CASIMIRO, I., LAKE, D., PERET, B., ZAPPALA, S., MAIRHOFER, S., WHITWORTH, M., WANG, J., LJUNG, K. and ET AL, 2011. Short-Root regulates primary, lateral, and adventitious root development in Arabidopsis. Plant Physiology. 155(1), 384-98 BASSEL, G.W., LAN, H., GLAAB, E., GIBBS, D.J., GERJETS, T., KRASNOGOR, N., BONNER, A.J., HOLDSWORTH, M.J. and PROVART, N.J., 2011. Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions Proceedings of the National Academy of Sciences of the United States of America: PNAS. 108(23), 9709-9714 BASSEL, G. W, HOLDSWORTH, M.J and PROVART, N.J., 2011. Seed bioinformatics. Methods in molecular biology (Clifton, N.J.). 773, 403-19 BASSEL, G.W., GLAAB, E., MARQUEZ, J., HOLDSWORTH, M.J. and BACARDIT, J., 2011. Functional network construction in Arabidopsis using rule-based machine learning on large-scale data sets The Plant Cell. 23(9), 3101-3116 GIBBS, D.J., LEE, S.C., ISA, N.M., GRAMUGLIA, .S, FUKAO, T., BASSEL, G.W., CORREIA, C.S., CORBINEAU, F., THEODOULOU, F.L., BAILEY-SERRES, J. and HOLDSWORTH, M.J., 2011. Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants. Nature. 479(7373), 415-418 PEARCE, SP, KING, JR and HOLDSWORTH, MJ, 2011. Axisymmetric Indentation Of Curved Elastic Membranes By A Convex Rigid Indenter International Journal Of Non-Linear Mechanics. 46(9), 1128-1138 DUPEUX, F., SANTIAGO, J., BETZ, K., TWYCROSS, J., PARK, S-Y., RODRIGUEZ, L., GONZALEZ-GUZMAN, M., JENSEN, M.R., KRASNOGOR, N., BLACKLEDGE, M., HOLDSWORTH, M., CUTLER, S.R., RODRIGUEZ, P.L. and MÁRQUEZ, J.A., 2011. A thermodynamic switch modulates abscisic acid receptor sensitivity EMBO Journal. 30(20), 4171-4184 GERJETS, T., SCHOLEFIELD, D., FOULKES, M.J., LENTON, J.R. and HOLDSWORTH, M.J., 2010. An analysis of dormancy, ABA responsiveness, after-ripening and pre-harvest sprouting in hexaploid wheat (Triticum aestivum L.) caryopses Journal of Experimental Botany. 61(2), 597-607 HOLMAN, T J, WILSON, M H, KENOBI, K, DRYDEN, I L, HODGMAN, T C, WOOD, A T and HOLDSWORTH, M J, 2010. Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray. Plant methods. 6, 9 DIETRICH, D, SCHMUTHS, H, DE MARCOS LOUSA, C, BALDWIN, J M, BALDWIN, S A, BAKER, A, THEODOULOU, F L and HOLDSWORTH, M J, 2009. Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series. Molecular Biology of the Cell. 20(1), 530-43
HOLMAN, T.J., JONES, P.D., RUSSELL, L., MEDHURST, A., TOMÁS, S.U., TALLOJI, P., MARQUEZ, J., SCHMUTHS, H., TUNG, S-A., TAYLOR, I., FOOTITT, S., BACHMAIR, A., THEODOULOU, F.L. and HOLDWORTH, M.J., 2009. The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America: PNAS. 106(11), 4549-4554 HOLDSWORTH, M J, BENTSINK, L and SOPPE, W J J, 2008. Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination. New Phytologist. 179(1), 33-54
HOLDSWORTH, M J, FINCH-SAVAGE, W E, GRAPPIN, P and JOB, D, 2008. Post-genomics dissection of seed dormancy and germination. Trends in Plant Science. 13(1), 7-13 CARRERA, E, HOLMAN, T, MEDHURST, A, DIETRICH, D, FOOTITT, S, THEODOULOU, F L and HOLDSWORTH, M J, 2008. Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis. Plant Journal. 53(2), 214-24 CARRERA, E., HOLMAN, T., MEDHURST, A., PEER, W., SCHMUTHS, H., FOOTITT, S., THEODOULOU, F.L. and HOLDSWORTH, M.J., 2007. Gene expression profiling reveals defined functions of the ATP-binding cassette transporter COMATOSE late in phase II of germination Plant Physiology. 143(4), 1669-79 FOOTITT, S, DIETRICH, D, FAIT, A, FERNIE, A R, HOLDSWORTH, M J, BAKER, A and THEODOULOU, F L, 2007. The COMATOSE ATP-Binding Cassette Transporter Is Required for Full Fertility in Arabidopsis. Plant Physiology. 144(3), 1467-80 HUNT, L, HOLDSWORTH, M J and GRAY, J E, 2007. Nicotinamidase activity is important for germination. Plant Journal. 51(3), 341-51 BAUDO, M. M., LYONS, R., POWERS, S., PASTORI, G. M., EDWARDS, K. J., HOLDSWORTH, M. J. and SHEWRY, P. R., 2006. Transgenesis has less impact on the transcriptome of wheat grain than conventional breeding Plant Biotechnology Journal. VOL 4(NUMBER 4), 369-380 FOOTITT, S, MARQUEZ, J, SCHMUTHS, H, BAKER, A, THEODOULOU, F L and HOLDSWORTH, M, 2006. Analysis of the role of COMATOSE and peroxisomal beta-oxidation in the determination of germination potential in Arabidopsis. Journal of Experimental Botany. 57(11), 2805-14 MAYES, S., HOLDSWORTH, M.J., PELLEGRINESCHI, A. and REYNOLDS, M., 2005. Allying genetic and physiological innovations to improve productivity of wheat and other crops. In: Yields of farmed species - Constraints and Opportunities in the 21st century Nottingham University Press, Nottingham. 89 - 122
EDWARDS, D., STEVENSON, D., FORSYTH, A., HEGARTY, M., BATLEY, J., HOLDSWORTH, M.J. and EDWARDS, K.J., 2004. Identification of transposon-tagged maize genes displaying homology to arrayed cDNA clones with the use of Mutator insertion display Genome. 1, 48-55
FOOTITT, S., SLOCOMBE, S.P., LARNER, V., KURUP, S., WU, Y., LARSON, T., GRAHAM, I., BAKER, A. and HOLDSWORTH, M., 2002. Control of germination and lipid mobilisation by COMATOSE, the Arabidopsis homologue of human ALDP EMBO Journal. 21(12), 2912-2922 MCKIBBIN, R.S., WILKINSON, M.D., BAILEY, P.C., FLINTHAM, J.E., ANDREW, L.M., LAZZERI, P.A., GALE, M.D., LENTON, J.R. and HOLDSWORTH, M.J., 2002. Transcripts of Vp-1 homeologues are misspliced in modern wheat and ancestral species Proceedings of the National Academy of Sciences of the United States of America. 99(15), 10203-8 WILKINSON, M. D., MCKIBBIN, R. S., BAILEY, P. C., FLINTHAM, J. E., GALE, M. D., LENTON, J. R. and HOLDSWORTH, M. J., 2002. Use of comparative molecular genetics to study pre harvest sprouting in wheat Euphytica. VOL 126(1), 27 - 33 PAZ-ARES, JAVIER and THE REGIA CONSORTIUM,, 2002. REGIA, An EU Project on Functional Genomics of Transcription Factors From Arabidopsis Thaliana. Comparative and functional genomics. 3(2), 102-8 HEDDEN, P, HOLDSWORTH, M J, SIMPSON, G G, EDWARDS, K J and LENTON, J R, 2002. New frontiers in plant development: from genes to phenotype. Trends in Plant Science. 7(9), 381-3 HOLDSWORTH, M.J., LENTON, J.R., FLINTHAM, J.E., GALE, M.D., KURUP, S., MCKIBBIN, R.S., BAILEY, P.C., LARNER, V. and RUSSELL, L., 2001. Genetic control mechanisms regulating the initiation of germination Journal of Plant Physiology. 158(4), 439 RUSSELL, L, LARNER, V, KURUP, S, BOUGOURD, S and HOLDSWORTH, M, 2000. The Arabidopsis COMATOSE locus regulates germination potential. Development (Cambridge). 127(17), 3759-67
BAILEY, P. C., MCKIBBIN, R. S., LENTON, J. R., HOLDSWORTH, M. J., FLINTHAM, J. E. and GALE, M. D., 1999. Genetic map locations for orthologous Vp1 genes in wheat and rice Theoretical and Applied Genetics. VOL 98(NUMBER 2), 281-284 ALBANI, D, HAMMOND-KOSACK, M C, SMITH, C, CONLAN, S, COLOT, V, HOLDSWORTH, M and BEVAN, M W, 1997. The wheat transcriptional activator SPA: a seed-specific bZIP protein that recognizes the GCN4-like motif in the bifactorial endosperm box of prolamin genes. Plant Cell. 9(2), 171-84 HOLDSWORTH, M J, MUñOZ-BLANCO, J, HAMMOND-KOSACK, M, COLOT, V, SCHUCH, W and BEVAN, M W, 1995. The maize transcription factor Opaque-2 activates a wheat glutenin promoter in plant and yeast cells. Plant Molecular Biology. 29(4), 711-20 GRIERSON, C, DU, J S, DE TORRES ZABALA, M, BEGGS, K, SMITH, C, HOLDSWORTH, M and BEVAN, M, 1994. Separate cis sequences and trans factors direct metabolic and developmental regulation of a potato tuber storage protein gene. Plant Journal. 5(6), 815-26 BEVAN, M, COLOT, V, HAMMOND-KOSACK, M, HOLDSWORTH, M, TORRES DE ZABALA, M, SMITH, C, GRIERSON, C and BEGGS, K, 1993. Transcriptional control of plant storage protein genes. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 342(1301), 209-15 HAMMOND-KOSACK, M C, HOLDSWORTH, M J and BEVAN, M W, 1993. In vivo footprinting of a low molecular weight glutenin gene (LMWG-1D1) in wheat endosperm. EMBO Journal. 12(2), 545-54
HOLDSWORTH, M J, GRIERSON, C, SCHUCH, W and BEVAN, M, 1992. DNA-binding properties of cloned TATA-binding protein from potato tubers. Plant Molecular Biology. 19(3), 455-64 HOLDSWORTH, M J, SCHUCH, W and GRIERSON, D, 1987. Nucleotide sequence of an ethylene-related gene from tomato. Nucleic Acids Research. 15(24), 10600 HOLDSWORTH, M J, BIRD, C R, RAY, J, SCHUCH, W and GRIERSON, D, 1987. Structure and expression of an ethylene-related mRNA from tomato. Nucleic Acids Research. 15(2), 731-9